slepc-dev - /trunk/

Rev 2701 -- Fixes for spectrum slicing

carcamgo — Tue, 29 Nov 2011 19:51:42 +0100

carcamgo -- 2 file(s) modified
Fixes for spectrum slicing

~ /trunk/src/eps/impls/krylov/krylovschur/krylovschur.c
~ /trunk/src/eps/impls/krylov/krylovschur/ks-slice.c

Rev 2699 -- Changed the default ksp type of JD to bcgsl (broken ...

eromero — Tue, 29 Nov 2011 19:38:00 +0100

eromero -- 1 file(s) modified
Changed the default ksp type of JD to bcgsl (broken EPS test9 and test11).

~ /trunk/src/eps/impls/davidson/jd/jd.c

Rev 2698 -- Require python 2.4

jroman — Tue, 29 Nov 2011 08:33:04 +0100

jroman -- 1 file(s) modified
Require python 2.4

~ /trunk/config/configure.py

Rev 2697 -- Update logo in users manual

jroman — Sat, 26 Nov 2011 13:29:39 +0100

jroman -- 2 file(s) modified
Update logo in users manual

x /trunk/docs/manual/figures/upv.pdf
+ /trunk/docs/manual/figures/upv.png

Rev 2695 -- Avoid a different PetscRandom context for EPS and the BLOPEX ...

jroman — Tue, 22 Nov 2011 18:36:16 +0100

jroman -- 3 file(s) modified
Avoid a different PetscRandom context for EPS and the BLOPEX interface

~ /trunk/src/eps/impls/external/blopex/blopex.c
~ /trunk/src/eps/impls/external/blopex/petsc-interface.c
~ /trunk/src/eps/impls/external/blopex/petsc-interface.h

Rev 2693 -- Fixes for BLOPEX in the manual and ex13

jroman — Tue, 22 Nov 2011 17:28:25 +0100

jroman -- 2 file(s) modified
Fixes for BLOPEX in the manual and ex13

~ /trunk/docs/manual/eps.tex
~ /trunk/src/eps/examples/tutorials/ex13.c

Rev 2691 -- Random seeds must be set in order for SlepcVecSetRandom to ...

jroman — Fri, 18 Nov 2011 17:51:30 +0100

jroman -- 5 file(s) modified
Random seeds must be set in order for SlepcVecSetRandom to work correctly

~ /trunk/src/eps/interface/basic.c
~ /trunk/src/ip/iporthog.c
~ /trunk/src/qep/interface/qepbasic.c
~ /trunk/src/svd/interface/svdbasic.c
~ /trunk/src/vec/vecutil.c

Rev 2689 -- In Davidson solvers, the convergence test with the eigenvalue residual ...

eromero — Thu, 17 Nov 2011 18:42:14 +0100

eromero -- 2 file(s) modified
In Davidson solvers, the convergence test with the eigenvalue residual is activated with the EPS true residual option.

~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c
~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c

Rev 2688 -- Update PETSc web site address

jroman — Thu, 17 Nov 2011 09:36:13 +0100

jroman -- 3 file(s) modified
Update PETSc web site address

~ /trunk/docs/faq.htm
~ /trunk/docs/instal.htm
~ /trunk/docs/manual.htm

Rev 2687 -- Add LOCDIR to ftn-custom makefile

jroman — Thu, 17 Nov 2011 07:30:43 +0100

jroman -- 1 file(s) modified
Add LOCDIR to ftn-custom makefile

~ /trunk/include/finclude/ftn-custom/makefile

Rev 2686 -- Add missing MANSEC

jroman — Wed, 16 Nov 2011 18:29:42 +0100

jroman -- 1 file(s) modified
Add missing MANSEC

~ /trunk/src/sys/ftn-custom/makefile

Rev 2681 -- Fixed bug in EPSCleanDenseSchur for complex arithmetic. Fixed compiling warning in ...

eromero — Wed, 16 Nov 2011 17:55:15 +0100

eromero -- 2 file(s) modified
Fixed bug in EPSCleanDenseSchur for complex arithmetic.
Fixed compiling warning in complex.

~ /trunk/src/eps/impls/davidson/common/dvd_blas.c
~ /trunk/src/eps/impls/davidson/common/dvd_calcpairs.c

Rev 2680 -- Add configure tests for newly added BlasLapack functions

jroman — Wed, 16 Nov 2011 16:34:43 +0100

jroman -- 5 file(s) modified
Add configure tests for newly added BlasLapack functions

~ /trunk/config/lapack.py
~ /trunk/include/slepcblaslapack.h
~ /trunk/src/eps/impls/davidson/common/davidson.h
~ /trunk/src/eps/impls/davidson/common/dvd_blas.c
~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c

Rev 2679 -- Fix check.Link: tests for individual Lapack routines were being done ...

jroman — Wed, 16 Nov 2011 16:24:56 +0100

jroman -- 2 file(s) modified
Fix check.Link: tests for individual Lapack routines were being done incorrectly because previous checklink.c existed

~ /trunk/config/check.py
~ /trunk/config/configure.py

Rev 2678 -- Fixed bug, prevented the default value of ncv to be ...

eromero — Wed, 16 Nov 2011 15:45:06 +0100

eromero -- 1 file(s) modified
Fixed bug, prevented the default value of ncv to be larger than the problem dimension in Davidson solvers.
Set harmonic as default extraction in Davidson solvers when seeking eigenvalues close to a target.

~ /trunk/src/eps/impls/davidson/common/davidson.c

Rev 2677 -- Fix compile problem in complex

jroman — Wed, 16 Nov 2011 15:36:16 +0100

jroman -- 1 file(s) modified
Fix compile problem in complex

~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c

Rev 2676 -- Fix the 'slepc_html' rule to avoid badly-formed html files for ...

jroman — Wed, 16 Nov 2011 14:44:23 +0100

jroman -- 1 file(s) modified
Fix the 'slepc_html' rule to avoid badly-formed html files for include files containing function prototypes with the keyword 'extern'

~ /trunk/conf/slepc_rules

Rev 2675 -- Optimized VecsMultS when sU=0. Optimized dvd_improvex_jd_proj_cuv when pwindow>0.

eromero — Wed, 16 Nov 2011 14:02:42 +0100

eromero -- 2 file(s) modified
Optimized VecsMultS when sU=0.
Optimized dvd_improvex_jd_proj_cuv when pwindow>0.

~ /trunk/src/eps/impls/davidson/common/dvd_blas.c
~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c

Rev 2674 -- Modified GD and JD EPS test5 options considering that small ...

eromero — Wed, 16 Nov 2011 12:35:27 +0100

eromero -- 1 file(s) modified
Modified GD and JD EPS test5 options considering that small problems are solved.

~ /trunk/src/eps/examples/tests/makefile

Rev 2673 -- Fixed problem compiling with complex arithmetic.

eromero — Wed, 16 Nov 2011 10:31:41 +0100

eromero -- 1 file(s) modified
Fixed problem compiling with complex arithmetic.

~ /trunk/src/eps/impls/davidson/common/dvd_blas.c

Rev 2672 -- Added a function to format generalized Schur decompositions in the ...

eromero — Wed, 16 Nov 2011 00:26:44 +0100

eromero -- 7 file(s) modified
Added a function to format generalized Schur decompositions in the LAPACK way.
Allowed GNHP to be solved without harmonic extraction in Davidson methods.
Considered the residual associated to the eigenpair, instead to the Schur pair, in the convergence criteria, for Davidson solvers.
Fixed bug: in some cases JD was not using the preconditioner.

~ /trunk/include/slepcblaslapack.h
~ /trunk/src/eps/impls/davidson/common/davidson.c
~ /trunk/src/eps/impls/davidson/common/davidson.h
~ /trunk/src/eps/impls/davidson/common/dvd_blas.c
~ /trunk/src/eps/impls/davidson/common/dvd_calcpairs.c
~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c
~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c

Rev 2671 -- Merge from release (c2670, Fortran interface for monitors)

jroman — Tue, 15 Nov 2011 15:18:16 +0100

jroman -- 40 file(s) modified
Merge from release (c2670, Fortran interface for monitors)

~ /trunk
~ /trunk/include/finclude/slepceps.h
~ /trunk/include/finclude/slepcip.h
~ /trunk/include/finclude/slepcqep.h
~ /trunk/include/finclude/slepcst.h
~ /trunk/include/finclude/slepcsvd.h
~ /trunk/src/eps/impls/external/arpack/arpack.c
~ /trunk/src/eps/impls/external/arpack/arpackp.h
~ /trunk/src/eps/impls/external/arpack/makefile
~ /trunk/src/eps/impls/external/blopex/blopex.c
~ /trunk/src/eps/impls/external/blopex/makefile
~ /trunk/src/eps/impls/external/blopex/slepc-interface.c
~ /trunk/src/eps/impls/external/blopex/slepc-interface.h
~ /trunk/src/eps/impls/external/blzpack/blzpack.c
~ /trunk/src/eps/impls/external/blzpack/blzpackp.h
~ /trunk/src/eps/impls/external/blzpack/makefile
~ /trunk/src/eps/impls/external/makefile
~ /trunk/src/eps/impls/external/primme/ftn-custom/makefile
~ /trunk/src/eps/impls/external/primme/ftn-custom/zprimmef.c
~ /trunk/src/eps/impls/external/primme/makefile
~ /trunk/src/eps/impls/external/primme/primme.c
~ /trunk/src/eps/impls/external/trlan/makefile
~ /trunk/src/eps/impls/external/trlan/trlan.c
~ /trunk/src/eps/impls/external/trlan/trlanp.h
~ /trunk/src/eps/impls/krylov/arnoldi/arnoldi.c
~ /trunk/src/eps/impls/krylov/arnoldi/makefile
~ /trunk/src/eps/impls/krylov/krylov.c
~ /trunk/src/eps/impls/krylov/krylovschur/krylovschur.c
~ /trunk/src/eps/impls/krylov/krylovschur/ks-harm.c
~ /trunk/src/eps/impls/krylov/krylovschur/ks-symm.c
~ /trunk/src/eps/impls/krylov/krylovschur/makefile
~ /trunk/src/eps/impls/krylov/lanczos/lanczos.c
~ /trunk/src/eps/impls/krylov/lanczos/makefile
~ /trunk/src/eps/impls/krylov/makefile
~ /trunk/src/eps/interface/ftn-custom/zepsf.c
~ /trunk/src/eps/interface/monitor.c
~ /trunk/src/qep/interface/ftn-custom/zqepf.c
~ /trunk/src/qep/interface/qepmon.c
~ /trunk/src/svd/interface/ftn-custom/zsvdf.c
~ /trunk/src/svd/interface/svdmon.c

Rev 2669 -- Merge from release, change 2668 (Lisandro)

jroman — Sun, 06 Nov 2011 18:59:29 +0100

jroman -- 30 file(s) modified
Merge from release, change 2668 (Lisandro)

~ /trunk
~ /trunk/setup.py
~ /trunk/src/eps/impls/external/arpack/arpack.c
~ /trunk/src/eps/impls/external/arpack/arpackp.h
~ /trunk/src/eps/impls/external/arpack/makefile
~ /trunk/src/eps/impls/external/blopex/blopex.c
~ /trunk/src/eps/impls/external/blopex/makefile
~ /trunk/src/eps/impls/external/blopex/slepc-interface.c
~ /trunk/src/eps/impls/external/blopex/slepc-interface.h
~ /trunk/src/eps/impls/external/blzpack/blzpack.c
~ /trunk/src/eps/impls/external/blzpack/blzpackp.h
~ /trunk/src/eps/impls/external/blzpack/makefile
~ /trunk/src/eps/impls/external/makefile
~ /trunk/src/eps/impls/external/primme/ftn-custom/makefile
~ /trunk/src/eps/impls/external/primme/ftn-custom/zprimmef.c
~ /trunk/src/eps/impls/external/primme/makefile
~ /trunk/src/eps/impls/external/primme/primme.c
~ /trunk/src/eps/impls/external/trlan/makefile
~ /trunk/src/eps/impls/external/trlan/trlan.c
~ /trunk/src/eps/impls/external/trlan/trlanp.h
~ /trunk/src/eps/impls/krylov/arnoldi/arnoldi.c
~ /trunk/src/eps/impls/krylov/arnoldi/makefile
~ /trunk/src/eps/impls/krylov/krylov.c
~ /trunk/src/eps/impls/krylov/krylovschur/krylovschur.c
~ /trunk/src/eps/impls/krylov/krylovschur/ks-harm.c
~ /trunk/src/eps/impls/krylov/krylovschur/ks-symm.c
~ /trunk/src/eps/impls/krylov/krylovschur/makefile
~ /trunk/src/eps/impls/krylov/lanczos/lanczos.c
~ /trunk/src/eps/impls/krylov/lanczos/makefile
~ /trunk/src/eps/impls/krylov/makefile

Rev 2666 -- Fixed compiling issue with cl.

eromero — Fri, 04 Nov 2011 17:17:22 +0100

eromero -- 1 file(s) modified
Fixed compiling issue with cl.

~ /trunk/src/eps/impls/krylov/krylovschur/ks-slice.c

Rev 2665 -- Fixed bug applying the preconditioner in GD.

eromero — Fri, 04 Nov 2011 13:30:22 +0100

eromero -- 1 file(s) modified
Fixed bug applying the preconditioner in GD.

~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c

Rev 2662 -- Fixed type in ks-slice

carcamgo — Fri, 04 Nov 2011 12:37:03 +0100

carcamgo -- 1 file(s) modified
Fixed type in ks-slice

~ /trunk/src/eps/impls/krylov/krylovschur/ks-slice.c

Rev 2661 -- Fixed typo.

eromero — Fri, 04 Nov 2011 12:32:13 +0100

eromero -- 1 file(s) modified
Fixed typo.

~ /trunk/src/vec/veccomp0.h

Rev 2660 -- Fixed issues compiling with cl.

eromero — Fri, 04 Nov 2011 12:22:40 +0100

eromero -- 2 file(s) modified
Fixed issues compiling with cl.

~ /trunk/src/eps/impls/davidson/common/dvd_calcpairs.c
~ /trunk/src/vec/veccomp0.h

Rev 2659 -- Corrected compilation error for windows

carcamgo — Fri, 04 Nov 2011 12:14:38 +0100

carcamgo -- 1 file(s) modified
Corrected compilation error for windows

~ /trunk/src/eps/impls/krylov/krylovschur/ks-slice.c

Rev 2658 -- Add missing header

jroman — Fri, 04 Nov 2011 10:18:19 +0100

jroman -- 1 file(s) modified
Add missing header

~ /trunk/src/eps/examples/tests/test6.c

Rev 2657 -- Fixed bug in harmonic extraction in Davidson solvers. Rewrote KXX projector.

eromero — Thu, 03 Nov 2011 23:25:41 +0100

eromero -- 2 file(s) modified
Fixed bug in harmonic extraction in Davidson solvers.
Rewrote KXX projector.

~ /trunk/src/eps/impls/davidson/common/dvd_calcpairs.c
~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c

Rev 2653 -- Default value for eps->balance must be set before the specific ...

jroman — Thu, 03 Nov 2011 17:28:31 +0100

jroman -- 1 file(s) modified
Default value for eps->balance must be set before the specific method setup, otherwise it gives an error when ESSetFromOptions is omitted

~ /trunk/src/eps/interface/setup.c

Rev 2652 -- Correctly manage options prefixes

jroman — Thu, 03 Nov 2011 17:21:30 +0100

jroman -- 4 file(s) modified
Correctly manage options prefixes

~ /trunk/src/eps/interface/opts.c
~ /trunk/src/qep/impls/linear/linear.c
~ /trunk/src/qep/interface/qepopts.c
~ /trunk/src/svd/interface/svdopts.c

Rev 2651 -- Added alignment pointer check for pointers used in LAPACK and ...

eromero — Thu, 03 Nov 2011 16:46:24 +0100

eromero -- 4 file(s) modified
Added alignment pointer check for pointers used in LAPACK and BLAS functions.
Fixed bug in extraction of pairs from the converged projected problem in Davidson solvers (QEP test1 and test2 work again!).

Rev 2650 -- Improved the performance of VecMult and VecMultS. Improved the performance of ...

eromero — Thu, 03 Nov 2011 12:51:11 +0100

eromero -- 6 file(s) modified
Improved the performance of VecMult and VecMultS.
Improved the performance of dvd_compute_eigenvectors.
Fixed bugs in Davidson solvers when pwindow or qwindow are greater than 0.
Fixed alignment memory problem in dvd_managementV_basic.
Fixed bugs computing the projector for complex eigenpairs in real arithmetic.
Check constrains for qwindow and pwindow values in Davidson solvers.
Fix parameter set to 0 in GD.
Partially fixed QEP test1 and test2.

~ /trunk/src/eps/impls/davidson/common/davidson.c
~ /trunk/src/eps/impls/davidson/common/dvd_blas.c
~ /trunk/src/eps/impls/davidson/common/dvd_calcpairs.c
~ /trunk/src/eps/impls/davidson/common/dvd_improvex.c
~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c
~ /trunk/src/eps/impls/davidson/gd/gd.c

Rev 2649 -- Remove warning in complex

jroman — Wed, 02 Nov 2011 13:00:57 +0100

jroman -- 1 file(s) modified
Remove warning in complex

~ /trunk/src/eps/impls/davidson/common/dvd_updatev.c

Rev 2648 -- Fixed prefix missing in ST and aggregated objects.

eromero — Wed, 02 Nov 2011 12:12:18 +0100

eromero -- 1 file(s) modified
Fixed prefix missing in ST and aggregated objects.

~ /trunk/src/st/interface/stfunc.c

Rev 2647 -- ST's KSP default tolerance set to SLEPC_DEFAULT_TOL.

eromero — Wed, 02 Nov 2011 11:49:53 +0100

eromero -- 1 file(s) modified
ST's KSP default tolerance set to SLEPC_DEFAULT_TOL.

~ /trunk/src/st/interface/stsles.c

Rev 2646 -- Remove unnecessary includes

jroman — Mon, 31 Oct 2011 19:19:53 +0100

jroman -- 14 file(s) modified
Remove unnecessary includes

~ /trunk/src/eps/impls/davidson/jd/jd.c
~ /trunk/src/eps/impls/external/blzpack/blzpack.c
~ /trunk/src/eps/impls/external/primme/primme.c
~ /trunk/src/eps/impls/krylov/krylov.c
~ /trunk/src/eps/interface/ftn-custom/zepsf.c
~ /trunk/src/eps/interface/setup.c
~ /trunk/src/qep/interface/qepdefault.c
~ /trunk/src/qep/interface/qepsetup.c
~ /trunk/src/svd/impls/lanczos/gklanczos.c
~ /trunk/src/svd/impls/trlanczos/trlanczos.c
~ /trunk/src/svd/interface/svdsetup.c
~ /trunk/src/sys/slepcinit.c
~ /trunk/src/sys/slepcutil.c
~ /trunk/src/vec/veccomp.c

Rev 2645 -- Do not use SUBSET_NONZERO_PATTERN in MatCopy

jroman — Mon, 31 Oct 2011 18:47:51 +0100

jroman -- 2 file(s) modified
Do not use SUBSET_NONZERO_PATTERN in MatCopy

~ /trunk/src/st/impls/cayley/cayley.c
~ /trunk/src/st/impls/sinvert/sinvert.c