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slepc |
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/*
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SLEPc singular value solver: "cyclic"
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slepc |
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Method: Uses a Hermitian eigensolver for H(A) = [ 0 A ; A^T 0 ]
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slepc |
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slepc |
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Last update: Jun 2007
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slepc |
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slepc |
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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slepc |
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SLEPc - Scalable Library for Eigenvalue Problem Computations
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eromero |
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Copyright (c) 2002-2011, Universitat Politecnica de Valencia, Spain
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slepc |
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slepc |
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This file is part of SLEPc.
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SLEPc is free software: you can redistribute it and/or modify it under the
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terms of version 3 of the GNU Lesser General Public License as published by
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the Free Software Foundation.
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SLEPc is distributed in the hope that it will be useful, but WITHOUT ANY
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WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for
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more details.
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You should have received a copy of the GNU Lesser General Public License
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along with SLEPc. If not, see <http://www.gnu.org/licenses/>.
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slepc |
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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slepc |
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*/
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slepc |
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jroman |
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#include <slepc-private/svdimpl.h> /*I "slepcsvd.h" I*/
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#include <slepc-private/epsimpl.h> /*I "slepceps.h" I*/
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slepc |
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typedef struct {
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jroman |
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PetscBool explicitmatrix;
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EPS eps;
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PetscBool setfromoptionscalled;
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Mat mat;
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Vec x1,x2,y1,y2;
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slepc |
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} SVD_CYCLIC;
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#undef __FUNCT__
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jroman |
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#define __FUNCT__ "ShellMatMult_Cyclic"
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jroman |
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static PetscErrorCode ShellMatMult_Cyclic(Mat B,Vec x,Vec y)
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slepc |
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{
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jroman |
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PetscErrorCode ierr;
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SVD svd;
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SVD_CYCLIC *cyclic;
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const PetscScalar *px;
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PetscScalar *py;
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PetscInt m;
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slepc |
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PetscFunctionBegin;
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ierr = MatShellGetContext(B,(void**)&svd);CHKERRQ(ierr);
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jroman |
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cyclic = (SVD_CYCLIC*)svd->data;
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slepc |
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ierr = SVDMatGetLocalSize(svd,&m,PETSC_NULL);CHKERRQ(ierr);
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jroman |
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ierr = VecGetArrayRead(x,&px);CHKERRQ(ierr);
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slepc |
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ierr = VecGetArray(y,&py);CHKERRQ(ierr);
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ierr = VecPlaceArray(cyclic->x1,px);CHKERRQ(ierr);
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ierr = VecPlaceArray(cyclic->x2,px+m);CHKERRQ(ierr);
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ierr = VecPlaceArray(cyclic->y1,py);CHKERRQ(ierr);
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ierr = VecPlaceArray(cyclic->y2,py+m);CHKERRQ(ierr);
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ierr = SVDMatMult(svd,PETSC_FALSE,cyclic->x2,cyclic->y1);CHKERRQ(ierr);
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ierr = SVDMatMult(svd,PETSC_TRUE,cyclic->x1,cyclic->y2);CHKERRQ(ierr);
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ierr = VecResetArray(cyclic->x1);CHKERRQ(ierr);
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ierr = VecResetArray(cyclic->x2);CHKERRQ(ierr);
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ierr = VecResetArray(cyclic->y1);CHKERRQ(ierr);
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ierr = VecResetArray(cyclic->y2);CHKERRQ(ierr);
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jroman |
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ierr = VecRestoreArrayRead(x,&px);CHKERRQ(ierr);
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slepc |
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ierr = VecRestoreArray(y,&py);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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jroman |
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#define __FUNCT__ "ShellMatGetDiagonal_Cyclic"
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static PetscErrorCode ShellMatGetDiagonal_Cyclic(Mat B,Vec diag)
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slepc |
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{
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PetscErrorCode ierr;
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PetscFunctionBegin;
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ierr = VecSet(diag,0.0);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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jroman |
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#define __FUNCT__ "SVDSetUp_Cyclic"
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PetscErrorCode SVDSetUp_Cyclic(SVD svd)
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slepc |
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{
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jroman |
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PetscErrorCode ierr;
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jroman |
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SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
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jroman |
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PetscInt M,N,m,n,i,isl;
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jroman |
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const PetscScalar *isa;
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jroman |
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PetscScalar *va;
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jroman |
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PetscBool trackall;
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jroman |
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Vec v;
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jroman |
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Mat Zm,Zn;
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slepc |
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PetscFunctionBegin;
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ierr = SVDMatGetSize(svd,&M,&N);CHKERRQ(ierr);
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ierr = SVDMatGetLocalSize(svd,&m,&n);CHKERRQ(ierr);
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jroman |
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if (!cyclic->mat) {
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if (cyclic->explicitmatrix) {
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if (!svd->AT) SETERRQ(((PetscObject)svd)->comm,PETSC_ERR_SUP,"Cannot use explicit cyclic matrix with implicit transpose");
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ierr = MatCreate(((PetscObject)svd)->comm,&Zm);CHKERRQ(ierr);
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ierr = MatSetSizes(Zm,m,m,M,M);CHKERRQ(ierr);
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ierr = MatSetFromOptions(Zm);CHKERRQ(ierr);
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jroman |
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ierr = MatSetUp(Zm);CHKERRQ(ierr);
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jroman |
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ierr = MatAssemblyBegin(Zm,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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ierr = MatAssemblyEnd(Zm,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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ierr = MatCreate(((PetscObject)svd)->comm,&Zn);CHKERRQ(ierr);
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ierr = MatSetSizes(Zn,n,n,N,N);CHKERRQ(ierr);
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ierr = MatSetFromOptions(Zn);CHKERRQ(ierr);
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jroman |
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ierr = MatSetUp(Zn);CHKERRQ(ierr);
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jroman |
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ierr = MatAssemblyBegin(Zn,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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ierr = MatAssemblyEnd(Zn,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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ierr = SlepcMatTile(0.0,Zm,1.0,svd->A,1.0,svd->AT,0.0,Zn,&cyclic->mat);CHKERRQ(ierr);
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ierr = MatDestroy(&Zm);CHKERRQ(ierr);
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ierr = MatDestroy(&Zn);CHKERRQ(ierr);
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} else {
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,m,M,PETSC_NULL,&cyclic->x1);CHKERRQ(ierr);
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,n,N,PETSC_NULL,&cyclic->x2);CHKERRQ(ierr);
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,m,M,PETSC_NULL,&cyclic->y1);CHKERRQ(ierr);
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,n,N,PETSC_NULL,&cyclic->y2);CHKERRQ(ierr);
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ierr = MatCreateShell(((PetscObject)svd)->comm,m+n,m+n,M+N,M+N,svd,&cyclic->mat);CHKERRQ(ierr);
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ierr = MatShellSetOperation(cyclic->mat,MATOP_MULT,(void(*)(void))ShellMatMult_Cyclic);CHKERRQ(ierr);
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ierr = MatShellSetOperation(cyclic->mat,MATOP_GET_DIAGONAL,(void(*)(void))ShellMatGetDiagonal_Cyclic);CHKERRQ(ierr);
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}
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slepc |
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}
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ierr = EPSSetOperators(cyclic->eps,cyclic->mat,PETSC_NULL);CHKERRQ(ierr);
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ierr = EPSSetProblemType(cyclic->eps,EPS_HEP);CHKERRQ(ierr);
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slepc |
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ierr = EPSSetWhichEigenpairs(cyclic->eps,svd->which == SVD_LARGEST ? EPS_LARGEST_REAL : EPS_SMALLEST_MAGNITUDE);CHKERRQ(ierr);
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slepc |
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ierr = EPSSetDimensions(cyclic->eps,svd->nsv,svd->ncv,svd->mpd);CHKERRQ(ierr);
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slepc |
132 |
ierr = EPSSetTolerances(cyclic->eps,svd->tol,svd->max_it);CHKERRQ(ierr);
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eromero |
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/* Transfer the trackall option from svd to eps */
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ierr = SVDGetTrackAll(svd,&trackall);CHKERRQ(ierr);
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ierr = EPSSetTrackAll(cyclic->eps,trackall);CHKERRQ(ierr);
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eromero |
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/* Transfer the initial subspace from svd to eps */
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if (svd->nini < 0) {
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for (i=0; i<-svd->nini; i++) {
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ierr = MatGetVecs(cyclic->mat,&v,PETSC_NULL);CHKERRQ(ierr);
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ierr = VecGetArray(v,&va);CHKERRQ(ierr);
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jroman |
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ierr = VecGetArrayRead(svd->IS[i],&isa);CHKERRQ(ierr);
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eromero |
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ierr = VecGetSize(svd->IS[i],&isl);CHKERRQ(ierr);
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if (isl == m) {
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ierr = PetscMemcpy(va,isa,sizeof(PetscScalar)*m);CHKERRQ(ierr);
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ierr = PetscMemzero(&va[m],sizeof(PetscScalar)*n);CHKERRQ(ierr);
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} else if (isl == n) {
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ierr = PetscMemzero(va,sizeof(PetscScalar)*m);CHKERRQ(ierr);
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ierr = PetscMemcpy(&va[m],isa,sizeof(PetscScalar)*n);CHKERRQ(ierr);
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} else {
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jroman |
150 |
SETERRQ(((PetscObject)svd)->comm,PETSC_ERR_SUP,"Size of the initial subspace vectors should match to some dimension of A");
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eromero |
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}
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ierr = VecRestoreArray(v,&va);CHKERRQ(ierr);
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jroman |
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ierr = VecRestoreArrayRead(svd->IS[i],&isa);CHKERRQ(ierr);
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jroman |
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ierr = VecDestroy(&svd->IS[i]);CHKERRQ(ierr);
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eromero |
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svd->IS[i] = v;
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}
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ierr = EPSSetInitialSpace(cyclic->eps,-svd->nini,svd->IS);CHKERRQ(ierr);
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for (i=0; i<-svd->nini; i++) {
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jroman |
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ierr = VecDestroy(&svd->IS[i]);CHKERRQ(ierr);
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eromero |
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}
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ierr = PetscFree(svd->IS);CHKERRQ(ierr);
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svd->nini = 0;
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}
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jroman |
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if (cyclic->setfromoptionscalled) {
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eromero |
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ierr = EPSSetFromOptions(cyclic->eps);CHKERRQ(ierr);
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cyclic->setfromoptionscalled = PETSC_FALSE;
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}
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slepc |
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ierr = EPSSetUp(cyclic->eps);CHKERRQ(ierr);
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slepc |
169 |
ierr = EPSGetDimensions(cyclic->eps,PETSC_NULL,&svd->ncv,&svd->mpd);CHKERRQ(ierr);
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jroman |
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svd->ncv = PetscMin(svd->ncv,PetscMin(M,N));
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slepc |
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ierr = EPSGetTolerances(cyclic->eps,&svd->tol,&svd->max_it);CHKERRQ(ierr);
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slepc |
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if (svd->ncv != svd->n) {
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jroman |
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ierr = VecDestroyVecs(svd->n,&svd->U);CHKERRQ(ierr);
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ierr = VecDuplicateVecs(svd->tl,svd->ncv,&svd->U);CHKERRQ(ierr);
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slepc |
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}
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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jroman |
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#define __FUNCT__ "SVDSolve_Cyclic"
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PetscErrorCode SVDSolve_Cyclic(SVD svd)
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slepc |
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{
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jroman |
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PetscErrorCode ierr;
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jroman |
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SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
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jroman |
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PetscInt i,j,M,N,m,n;
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PetscScalar sigma;
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const PetscScalar *px;
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Vec x,x1,x2;
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slepc |
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PetscFunctionBegin;
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ierr = EPSSolve(cyclic->eps);CHKERRQ(ierr);
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ierr = EPSGetConverged(cyclic->eps,&svd->nconv);CHKERRQ(ierr);
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ierr = EPSGetIterationNumber(cyclic->eps,&svd->its);CHKERRQ(ierr);
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ierr = EPSGetConvergedReason(cyclic->eps,(EPSConvergedReason*)&svd->reason);CHKERRQ(ierr);
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ierr = MatGetVecs(cyclic->mat,&x,PETSC_NULL);CHKERRQ(ierr);
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jroman |
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ierr = SVDMatGetSize(svd,&M,&N);CHKERRQ(ierr);
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ierr = SVDMatGetLocalSize(svd,&m,&n);CHKERRQ(ierr);
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,m,M,PETSC_NULL,&x1);CHKERRQ(ierr);
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ierr = VecCreateMPIWithArray(((PetscObject)svd)->comm,n,N,PETSC_NULL,&x2);CHKERRQ(ierr);
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for (i=0,j=0;i<svd->nconv;i++) {
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ierr = EPSGetEigenpair(cyclic->eps,i,&sigma,PETSC_NULL,x,PETSC_NULL);CHKERRQ(ierr);
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if (PetscRealPart(sigma) > 0.0) {
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svd->sigma[j] = PetscRealPart(sigma);
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jroman |
206 |
ierr = VecGetArrayRead(x,&px);CHKERRQ(ierr);
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| 2297 |
jroman |
207 |
ierr = VecPlaceArray(x1,px);CHKERRQ(ierr);
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ierr = VecPlaceArray(x2,px+m);CHKERRQ(ierr);
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ierr = VecCopy(x1,svd->U[j]);CHKERRQ(ierr);
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jroman |
210 |
ierr = VecScale(svd->U[j],1.0/PetscSqrtReal(2.0));CHKERRQ(ierr);
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| 2297 |
jroman |
211 |
ierr = VecCopy(x2,svd->V[j]);CHKERRQ(ierr);
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jroman |
212 |
ierr = VecScale(svd->V[j],1.0/PetscSqrtReal(2.0));CHKERRQ(ierr);
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| 2297 |
jroman |
213 |
ierr = VecResetArray(x1);CHKERRQ(ierr);
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ierr = VecResetArray(x2);CHKERRQ(ierr);
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jroman |
215 |
ierr = VecRestoreArrayRead(x,&px);CHKERRQ(ierr);
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jroman |
216 |
j++;
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slepc |
217 |
}
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}
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219 |
svd->nconv = j;
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jroman |
221 |
ierr = VecDestroy(&x);CHKERRQ(ierr);
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ierr = VecDestroy(&x1);CHKERRQ(ierr);
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ierr = VecDestroy(&x2);CHKERRQ(ierr);
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slepc |
224 |
PetscFunctionReturn(0);
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}
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226 |
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#undef __FUNCT__
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| 2324 |
jroman |
228 |
#define __FUNCT__ "SVDMonitor_Cyclic"
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| 2382 |
jroman |
229 |
static PetscErrorCode SVDMonitor_Cyclic(EPS eps,PetscInt its,PetscInt nconv,PetscScalar *eigr,PetscScalar *eigi,PetscReal *errest,PetscInt nest,void *ctx)
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slepc |
230 |
{
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| 2054 |
eromero |
231 |
PetscInt i,j;
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SVD svd = (SVD)ctx;
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PetscScalar er,ei;
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PetscErrorCode ierr;
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| 1324 |
slepc |
235 |
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PetscFunctionBegin;
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237 |
nconv = 0;
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| 2605 |
eromero |
238 |
for (i=0,j=0;i<PetscMin(nest,svd->ncv);i++) {
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| 2054 |
eromero |
239 |
er = eigr[i]; ei = eigi[i];
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| 2331 |
jroman |
240 |
ierr = STBackTransform(eps->OP,1,&er,&ei);CHKERRQ(ierr);
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| 2054 |
eromero |
241 |
if (PetscRealPart(er) > 0.0) {
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242 |
svd->sigma[j] = PetscRealPart(er);
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| 1324 |
slepc |
243 |
svd->errest[j] = errest[i];
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244 |
if (errest[i] < svd->tol) nconv++;
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j++;
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}
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}
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248 |
nest = j;
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| 2313 |
jroman |
249 |
ierr = SVDMonitor(svd,its,nconv,svd->sigma,svd->errest,nest);CHKERRQ(ierr);
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| 1324 |
slepc |
250 |
PetscFunctionReturn(0);
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251 |
}
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252 |
|
|
|
253 |
#undef __FUNCT__
|
| 2324 |
jroman |
254 |
#define __FUNCT__ "SVDSetFromOptions_Cyclic"
|
|
|
255 |
PetscErrorCode SVDSetFromOptions_Cyclic(SVD svd)
|
| 1324 |
slepc |
256 |
{
|
|
|
257 |
PetscErrorCode ierr;
|
| 2216 |
jroman |
258 |
PetscBool set,val;
|
| 2350 |
jroman |
259 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
260 |
ST st;
|
|
|
261 |
|
|
|
262 |
PetscFunctionBegin;
|
| 2388 |
jroman |
263 |
cyclic->setfromoptionscalled = PETSC_TRUE;
|
| 2384 |
jroman |
264 |
ierr = PetscOptionsHead("SVD Cyclic Options");CHKERRQ(ierr);
|
| 2216 |
jroman |
265 |
ierr = PetscOptionsBool("-svd_cyclic_explicitmatrix","Use cyclic explicit matrix","SVDCyclicSetExplicitMatrix",cyclic->explicitmatrix,&val,&set);CHKERRQ(ierr);
|
| 1923 |
jroman |
266 |
if (set) {
|
|
|
267 |
ierr = SVDCyclicSetExplicitMatrix(svd,val);CHKERRQ(ierr);
|
|
|
268 |
}
|
| 2297 |
jroman |
269 |
if (!cyclic->explicitmatrix) {
|
| 1324 |
slepc |
270 |
/* use as default an ST with shell matrix and Jacobi */
|
|
|
271 |
ierr = EPSGetST(cyclic->eps,&st);CHKERRQ(ierr);
|
| 1940 |
jroman |
272 |
ierr = STSetMatMode(st,ST_MATMODE_SHELL);CHKERRQ(ierr);
|
| 1324 |
slepc |
273 |
}
|
| 2384 |
jroman |
274 |
ierr = PetscOptionsTail();CHKERRQ(ierr);
|
| 1324 |
slepc |
275 |
PetscFunctionReturn(0);
|
|
|
276 |
}
|
|
|
277 |
|
|
|
278 |
EXTERN_C_BEGIN
|
|
|
279 |
#undef __FUNCT__
|
| 2324 |
jroman |
280 |
#define __FUNCT__ "SVDCyclicSetExplicitMatrix_Cyclic"
|
|
|
281 |
PetscErrorCode SVDCyclicSetExplicitMatrix_Cyclic(SVD svd,PetscBool explicitmatrix)
|
| 1324 |
slepc |
282 |
{
|
| 2350 |
jroman |
283 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
284 |
|
|
|
285 |
PetscFunctionBegin;
|
| 1370 |
slepc |
286 |
cyclic->explicitmatrix = explicitmatrix;
|
| 1324 |
slepc |
287 |
PetscFunctionReturn(0);
|
|
|
288 |
}
|
| 1370 |
slepc |
289 |
EXTERN_C_END
|
| 1324 |
slepc |
290 |
|
|
|
291 |
#undef __FUNCT__
|
|
|
292 |
#define __FUNCT__ "SVDCyclicSetExplicitMatrix"
|
|
|
293 |
/*@
|
| 1325 |
slepc |
294 |
SVDCyclicSetExplicitMatrix - Indicate if the eigensolver operator
|
| 1324 |
slepc |
295 |
H(A) = [ 0 A ; A^T 0 ] must be computed explicitly.
|
|
|
296 |
|
| 2328 |
jroman |
297 |
Logically Collective on SVD
|
| 1324 |
slepc |
298 |
|
|
|
299 |
Input Parameters:
|
|
|
300 |
+ svd - singular value solver
|
| 1325 |
slepc |
301 |
- explicit - boolean flag indicating if H(A) is built explicitly
|
| 1324 |
slepc |
302 |
|
|
|
303 |
Options Database Key:
|
|
|
304 |
. -svd_cyclic_explicitmatrix <boolean> - Indicates the boolean flag
|
|
|
305 |
|
| 1325 |
slepc |
306 |
Level: advanced
|
| 1324 |
slepc |
307 |
|
|
|
308 |
.seealso: SVDCyclicGetExplicitMatrix()
|
|
|
309 |
@*/
|
| 2216 |
jroman |
310 |
PetscErrorCode SVDCyclicSetExplicitMatrix(SVD svd,PetscBool explicitmatrix)
|
| 1324 |
slepc |
311 |
{
|
| 2221 |
jroman |
312 |
PetscErrorCode ierr;
|
| 1324 |
slepc |
313 |
|
|
|
314 |
PetscFunctionBegin;
|
| 2213 |
jroman |
315 |
PetscValidHeaderSpecific(svd,SVD_CLASSID,1);
|
| 2326 |
jroman |
316 |
PetscValidLogicalCollectiveBool(svd,explicitmatrix,2);
|
| 2221 |
jroman |
317 |
ierr = PetscTryMethod(svd,"SVDCyclicSetExplicitMatrix_C",(SVD,PetscBool),(svd,explicitmatrix));CHKERRQ(ierr);
|
| 1324 |
slepc |
318 |
PetscFunctionReturn(0);
|
|
|
319 |
}
|
|
|
320 |
|
|
|
321 |
EXTERN_C_BEGIN
|
|
|
322 |
#undef __FUNCT__
|
| 2324 |
jroman |
323 |
#define __FUNCT__ "SVDCyclicGetExplicitMatrix_Cyclic"
|
|
|
324 |
PetscErrorCode SVDCyclicGetExplicitMatrix_Cyclic(SVD svd,PetscBool *explicitmatrix)
|
| 1324 |
slepc |
325 |
{
|
| 2350 |
jroman |
326 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
327 |
|
|
|
328 |
PetscFunctionBegin;
|
| 1370 |
slepc |
329 |
*explicitmatrix = cyclic->explicitmatrix;
|
| 1324 |
slepc |
330 |
PetscFunctionReturn(0);
|
|
|
331 |
}
|
| 1370 |
slepc |
332 |
EXTERN_C_END
|
| 1324 |
slepc |
333 |
|
|
|
334 |
#undef __FUNCT__
|
|
|
335 |
#define __FUNCT__ "SVDCyclicGetExplicitMatrix"
|
| 2061 |
eromero |
336 |
/*@
|
| 1325 |
slepc |
337 |
SVDCyclicGetExplicitMatrix - Returns the flag indicating if H(A) is built explicitly
|
|
|
338 |
|
| 2328 |
jroman |
339 |
Not Collective
|
| 1324 |
slepc |
340 |
|
|
|
341 |
Input Parameter:
|
|
|
342 |
. svd - singular value solver
|
|
|
343 |
|
|
|
344 |
Output Parameter:
|
|
|
345 |
. explicit - the mode flag
|
|
|
346 |
|
| 1325 |
slepc |
347 |
Level: advanced
|
| 1324 |
slepc |
348 |
|
|
|
349 |
.seealso: SVDCyclicSetExplicitMatrix()
|
|
|
350 |
@*/
|
| 2216 |
jroman |
351 |
PetscErrorCode SVDCyclicGetExplicitMatrix(SVD svd,PetscBool *explicitmatrix)
|
| 1324 |
slepc |
352 |
{
|
| 2221 |
jroman |
353 |
PetscErrorCode ierr;
|
| 1324 |
slepc |
354 |
|
|
|
355 |
PetscFunctionBegin;
|
| 2213 |
jroman |
356 |
PetscValidHeaderSpecific(svd,SVD_CLASSID,1);
|
| 2326 |
jroman |
357 |
PetscValidPointer(explicitmatrix,2);
|
| 2221 |
jroman |
358 |
ierr = PetscTryMethod(svd,"SVDCyclicGetExplicitMatrix_C",(SVD,PetscBool*),(svd,explicitmatrix));CHKERRQ(ierr);
|
| 1324 |
slepc |
359 |
PetscFunctionReturn(0);
|
|
|
360 |
}
|
|
|
361 |
|
|
|
362 |
EXTERN_C_BEGIN
|
|
|
363 |
#undef __FUNCT__
|
| 2324 |
jroman |
364 |
#define __FUNCT__ "SVDCyclicSetEPS_Cyclic"
|
|
|
365 |
PetscErrorCode SVDCyclicSetEPS_Cyclic(SVD svd,EPS eps)
|
| 1324 |
slepc |
366 |
{
|
|
|
367 |
PetscErrorCode ierr;
|
| 2350 |
jroman |
368 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
369 |
|
|
|
370 |
PetscFunctionBegin;
|
|
|
371 |
ierr = PetscObjectReference((PetscObject)eps);CHKERRQ(ierr);
|
| 2308 |
jroman |
372 |
ierr = EPSDestroy(&cyclic->eps);CHKERRQ(ierr);
|
| 1324 |
slepc |
373 |
cyclic->eps = eps;
|
| 2327 |
jroman |
374 |
ierr = PetscLogObjectParent(svd,cyclic->eps);CHKERRQ(ierr);
|
| 1324 |
slepc |
375 |
svd->setupcalled = 0;
|
|
|
376 |
PetscFunctionReturn(0);
|
|
|
377 |
}
|
|
|
378 |
EXTERN_C_END
|
|
|
379 |
|
|
|
380 |
#undef __FUNCT__
|
|
|
381 |
#define __FUNCT__ "SVDCyclicSetEPS"
|
|
|
382 |
/*@
|
| 1325 |
slepc |
383 |
SVDCyclicSetEPS - Associate an eigensolver object (EPS) to the
|
| 1324 |
slepc |
384 |
singular value solver.
|
|
|
385 |
|
|
|
386 |
Collective on SVD
|
|
|
387 |
|
|
|
388 |
Input Parameters:
|
|
|
389 |
+ svd - singular value solver
|
|
|
390 |
- eps - the eigensolver object
|
|
|
391 |
|
|
|
392 |
Level: advanced
|
|
|
393 |
|
|
|
394 |
.seealso: SVDCyclicGetEPS()
|
|
|
395 |
@*/
|
|
|
396 |
PetscErrorCode SVDCyclicSetEPS(SVD svd,EPS eps)
|
|
|
397 |
{
|
| 2221 |
jroman |
398 |
PetscErrorCode ierr;
|
| 1324 |
slepc |
399 |
|
|
|
400 |
PetscFunctionBegin;
|
| 2213 |
jroman |
401 |
PetscValidHeaderSpecific(svd,SVD_CLASSID,1);
|
| 2221 |
jroman |
402 |
PetscValidHeaderSpecific(eps,EPS_CLASSID,2);
|
| 2326 |
jroman |
403 |
PetscCheckSameComm(svd,1,eps,2);
|
| 2221 |
jroman |
404 |
ierr = PetscTryMethod(svd,"SVDCyclicSetEPS_C",(SVD,EPS),(svd,eps));CHKERRQ(ierr);
|
| 1324 |
slepc |
405 |
PetscFunctionReturn(0);
|
|
|
406 |
}
|
|
|
407 |
|
|
|
408 |
EXTERN_C_BEGIN
|
|
|
409 |
#undef __FUNCT__
|
| 2324 |
jroman |
410 |
#define __FUNCT__ "SVDCyclicGetEPS_Cyclic"
|
|
|
411 |
PetscErrorCode SVDCyclicGetEPS_Cyclic(SVD svd,EPS *eps)
|
| 1324 |
slepc |
412 |
{
|
| 2350 |
jroman |
413 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
414 |
|
|
|
415 |
PetscFunctionBegin;
|
|
|
416 |
*eps = cyclic->eps;
|
|
|
417 |
PetscFunctionReturn(0);
|
|
|
418 |
}
|
|
|
419 |
EXTERN_C_END
|
|
|
420 |
|
|
|
421 |
#undef __FUNCT__
|
|
|
422 |
#define __FUNCT__ "SVDCyclicGetEPS"
|
| 2061 |
eromero |
423 |
/*@
|
| 1324 |
slepc |
424 |
SVDCyclicGetEPS - Retrieve the eigensolver object (EPS) associated
|
|
|
425 |
to the singular value solver.
|
|
|
426 |
|
|
|
427 |
Not Collective
|
|
|
428 |
|
| 1325 |
slepc |
429 |
Input Parameter:
|
| 1324 |
slepc |
430 |
. svd - singular value solver
|
|
|
431 |
|
|
|
432 |
Output Parameter:
|
|
|
433 |
. eps - the eigensolver object
|
|
|
434 |
|
|
|
435 |
Level: advanced
|
|
|
436 |
|
|
|
437 |
.seealso: SVDCyclicSetEPS()
|
|
|
438 |
@*/
|
|
|
439 |
PetscErrorCode SVDCyclicGetEPS(SVD svd,EPS *eps)
|
|
|
440 |
{
|
| 2221 |
jroman |
441 |
PetscErrorCode ierr;
|
| 1324 |
slepc |
442 |
|
|
|
443 |
PetscFunctionBegin;
|
| 2213 |
jroman |
444 |
PetscValidHeaderSpecific(svd,SVD_CLASSID,1);
|
| 2326 |
jroman |
445 |
PetscValidPointer(eps,2);
|
| 2221 |
jroman |
446 |
ierr = PetscTryMethod(svd,"SVDCyclicGetEPS_C",(SVD,EPS*),(svd,eps));CHKERRQ(ierr);
|
| 1324 |
slepc |
447 |
PetscFunctionReturn(0);
|
|
|
448 |
}
|
|
|
449 |
|
|
|
450 |
#undef __FUNCT__
|
| 2324 |
jroman |
451 |
#define __FUNCT__ "SVDView_Cyclic"
|
|
|
452 |
PetscErrorCode SVDView_Cyclic(SVD svd,PetscViewer viewer)
|
| 1324 |
slepc |
453 |
{
|
| 2317 |
jroman |
454 |
PetscErrorCode ierr;
|
| 2350 |
jroman |
455 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
456 |
|
|
|
457 |
PetscFunctionBegin;
|
| 2367 |
jroman |
458 |
ierr = PetscViewerASCIIPrintf(viewer," Cyclic: %s matrix\n",cyclic->explicitmatrix?"explicit":"implicit");CHKERRQ(ierr);
|
|
|
459 |
ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
|
| 1324 |
slepc |
460 |
ierr = EPSView(cyclic->eps,viewer);CHKERRQ(ierr);
|
| 2367 |
jroman |
461 |
ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
|
| 1324 |
slepc |
462 |
PetscFunctionReturn(0);
|
|
|
463 |
}
|
|
|
464 |
|
|
|
465 |
#undef __FUNCT__
|
| 2350 |
jroman |
466 |
#define __FUNCT__ "SVDReset_Cyclic"
|
|
|
467 |
PetscErrorCode SVDReset_Cyclic(SVD svd)
|
| 1324 |
slepc |
468 |
{
|
| 2317 |
jroman |
469 |
PetscErrorCode ierr;
|
| 2350 |
jroman |
470 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
| 1324 |
slepc |
471 |
|
|
|
472 |
PetscFunctionBegin;
|
| 2350 |
jroman |
473 |
ierr = EPSReset(cyclic->eps);CHKERRQ(ierr);
|
| 2305 |
jroman |
474 |
ierr = MatDestroy(&cyclic->mat);CHKERRQ(ierr);
|
|
|
475 |
ierr = VecDestroy(&cyclic->x1);CHKERRQ(ierr);
|
|
|
476 |
ierr = VecDestroy(&cyclic->x2);CHKERRQ(ierr);
|
|
|
477 |
ierr = VecDestroy(&cyclic->y1);CHKERRQ(ierr);
|
|
|
478 |
ierr = VecDestroy(&cyclic->y2);CHKERRQ(ierr);
|
| 2350 |
jroman |
479 |
PetscFunctionReturn(0);
|
|
|
480 |
}
|
|
|
481 |
|
|
|
482 |
#undef __FUNCT__
|
|
|
483 |
#define __FUNCT__ "SVDDestroy_Cyclic"
|
|
|
484 |
PetscErrorCode SVDDestroy_Cyclic(SVD svd)
|
|
|
485 |
{
|
|
|
486 |
PetscErrorCode ierr;
|
|
|
487 |
SVD_CYCLIC *cyclic = (SVD_CYCLIC*)svd->data;
|
|
|
488 |
|
|
|
489 |
PetscFunctionBegin;
|
|
|
490 |
ierr = EPSDestroy(&cyclic->eps);CHKERRQ(ierr);
|
| 1396 |
slepc |
491 |
ierr = PetscFree(svd->data);CHKERRQ(ierr);
|
| 1925 |
jroman |
492 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicSetEPS_C","",PETSC_NULL);CHKERRQ(ierr);
|
|
|
493 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicGetEPS_C","",PETSC_NULL);CHKERRQ(ierr);
|
|
|
494 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicSetExplicitMatrix_C","",PETSC_NULL);CHKERRQ(ierr);
|
|
|
495 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicGetExplicitMatrix_C","",PETSC_NULL);CHKERRQ(ierr);
|
| 1324 |
slepc |
496 |
PetscFunctionReturn(0);
|
|
|
497 |
}
|
|
|
498 |
|
|
|
499 |
EXTERN_C_BEGIN
|
|
|
500 |
#undef __FUNCT__
|
| 2324 |
jroman |
501 |
#define __FUNCT__ "SVDCreate_Cyclic"
|
|
|
502 |
PetscErrorCode SVDCreate_Cyclic(SVD svd)
|
| 1324 |
slepc |
503 |
{
|
| 2317 |
jroman |
504 |
PetscErrorCode ierr;
|
|
|
505 |
SVD_CYCLIC *cyclic;
|
| 1324 |
slepc |
506 |
|
|
|
507 |
PetscFunctionBegin;
|
| 2329 |
jroman |
508 |
ierr = PetscNewLog(svd,SVD_CYCLIC,&cyclic);CHKERRQ(ierr);
|
| 1324 |
slepc |
509 |
svd->data = (void *)cyclic;
|
| 2324 |
jroman |
510 |
svd->ops->solve = SVDSolve_Cyclic;
|
|
|
511 |
svd->ops->setup = SVDSetUp_Cyclic;
|
|
|
512 |
svd->ops->setfromoptions = SVDSetFromOptions_Cyclic;
|
|
|
513 |
svd->ops->destroy = SVDDestroy_Cyclic;
|
| 2350 |
jroman |
514 |
svd->ops->reset = SVDReset_Cyclic;
|
| 2324 |
jroman |
515 |
svd->ops->view = SVDView_Cyclic;
|
|
|
516 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicSetEPS_C","SVDCyclicSetEPS_Cyclic",SVDCyclicSetEPS_Cyclic);CHKERRQ(ierr);
|
|
|
517 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicGetEPS_C","SVDCyclicGetEPS_Cyclic",SVDCyclicGetEPS_Cyclic);CHKERRQ(ierr);
|
|
|
518 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicSetExplicitMatrix_C","SVDCyclicSetExplicitMatrix_Cyclic",SVDCyclicSetExplicitMatrix_Cyclic);CHKERRQ(ierr);
|
|
|
519 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)svd,"SVDCyclicGetExplicitMatrix_C","SVDCyclicGetExplicitMatrix_Cyclic",SVDCyclicGetExplicitMatrix_Cyclic);CHKERRQ(ierr);
|
| 1324 |
slepc |
520 |
|
| 1422 |
slepc |
521 |
ierr = EPSCreate(((PetscObject)svd)->comm,&cyclic->eps);CHKERRQ(ierr);
|
|
|
522 |
ierr = EPSSetOptionsPrefix(cyclic->eps,((PetscObject)svd)->prefix);CHKERRQ(ierr);
|
| 1324 |
slepc |
523 |
ierr = EPSAppendOptionsPrefix(cyclic->eps,"svd_");CHKERRQ(ierr);
|
| 1532 |
slepc |
524 |
ierr = PetscObjectIncrementTabLevel((PetscObject)cyclic->eps,(PetscObject)svd,1);CHKERRQ(ierr);
|
| 2327 |
jroman |
525 |
ierr = PetscLogObjectParent(svd,cyclic->eps);CHKERRQ(ierr);
|
| 2449 |
eromero |
526 |
if (!svd->ip) { ierr = SVDGetIP(svd,&svd->ip);CHKERRQ(ierr); }
|
| 1345 |
slepc |
527 |
ierr = EPSSetIP(cyclic->eps,svd->ip);CHKERRQ(ierr);
|
| 1324 |
slepc |
528 |
ierr = EPSSetWhichEigenpairs(cyclic->eps,EPS_LARGEST_REAL);CHKERRQ(ierr);
|
| 2324 |
jroman |
529 |
ierr = EPSMonitorSet(cyclic->eps,SVDMonitor_Cyclic,svd,PETSC_NULL);CHKERRQ(ierr);
|
| 1370 |
slepc |
530 |
cyclic->explicitmatrix = PETSC_FALSE;
|
| 1324 |
slepc |
531 |
cyclic->mat = PETSC_NULL;
|
|
|
532 |
cyclic->x1 = PETSC_NULL;
|
|
|
533 |
cyclic->x2 = PETSC_NULL;
|
|
|
534 |
cyclic->y1 = PETSC_NULL;
|
|
|
535 |
cyclic->y2 = PETSC_NULL;
|
| 2024 |
eromero |
536 |
cyclic->setfromoptionscalled = PETSC_FALSE;
|
| 1324 |
slepc |
537 |
PetscFunctionReturn(0);
|
|
|
538 |
}
|
|
|
539 |
EXTERN_C_END
|