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dsic.upv.es!jroman |
1 |
/*
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Routines to set ST methods and options.
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slepc |
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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slepc |
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SLEPc - Scalable Library for Eigenvalue Problem Computations
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eromero |
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Copyright (c) 2002-2011, Universitat Politecnica de Valencia, Spain
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slepc |
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slepc |
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This file is part of SLEPc.
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SLEPc is free software: you can redistribute it and/or modify it under the
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terms of version 3 of the GNU Lesser General Public License as published by
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the Free Software Foundation.
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SLEPc is distributed in the hope that it will be useful, but WITHOUT ANY
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WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for
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more details.
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You should have received a copy of the GNU Lesser General Public License
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along with SLEPc. If not, see <http://www.gnu.org/licenses/>.
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slepc |
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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dsic.upv.es!jroman |
22 |
*/
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jroman |
24 |
#include <slepc-private/stimpl.h> /*I "slepcst.h" I*/
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dsic.upv.es!jroman |
25 |
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jroman |
26 |
PetscBool STRegisterAllCalled = PETSC_FALSE;
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dsic.upv.es!jroman |
27 |
PetscFList STList = 0;
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#undef __FUNCT__
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#define __FUNCT__ "STSetType"
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/*@C
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STSetType - Builds ST for a particular spectral transformation.
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jroman |
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Logically Collective on ST
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dsic.upv.es!jroman |
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Input Parameter:
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+ st - the spectral transformation context.
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- type - a known type
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Options Database Key:
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. -st_type <type> - Sets ST type
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dsic.upv.es!jroman |
43 |
Use -help for a list of available transformations
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dsic.upv.es!jroman |
44 |
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Notes:
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dsic.upv.es!jroman |
46 |
See "slepc/include/slepcst.h" for available transformations
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dsic.upv.es!jroman |
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Normally, it is best to use the EPSSetFromOptions() command and
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then set the ST type from the options database rather than by using
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this routine. Using the options database provides the user with
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maximum flexibility in evaluating the many different transformations.
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Level: intermediate
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.seealso: EPSSetType()
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@*/
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slepc |
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PetscErrorCode STSetType(ST st,const STType type)
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dsic.upv.es!jroman |
59 |
{
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dsic.upv.es!antodo |
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PetscErrorCode ierr,(*r)(ST);
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jroman |
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PetscBool match;
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dsic.upv.es!jroman |
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PetscFunctionBegin;
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jroman |
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PetscValidHeaderSpecific(st,ST_CLASSID,1);
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dsic.upv.es!jroman |
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PetscValidCharPointer(type,2);
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dsic.upv.es!jroman |
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jroman |
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ierr = PetscObjectTypeCompare((PetscObject)st,type,&match);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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if (match) PetscFunctionReturn(0);
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jroman |
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ierr = PetscFListFind(STList,((PetscObject)st)->comm,type,PETSC_TRUE,(void (**)(void))&r);CHKERRQ(ierr);
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if (!r) SETERRQ1(((PetscObject)st)->comm,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested ST type %s",type);
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dsic.upv.es!jroman |
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jroman |
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if (st->ops->destroy) { ierr = (*st->ops->destroy)(st);CHKERRQ(ierr); }
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dsic.upv.es!antodo |
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ierr = PetscMemzero(st->ops,sizeof(struct _STOps));CHKERRQ(ierr);
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dsic.upv.es!jroman |
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jroman |
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st->setupcalled = 0;
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dsic.upv.es!jroman |
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ierr = PetscObjectChangeTypeName((PetscObject)st,type);CHKERRQ(ierr);
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jroman |
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ierr = (*r)(st);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STGetType"
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/*@C
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dsic.upv.es!jroman |
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STGetType - Gets the ST type name (as a string) from the ST context.
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dsic.upv.es!jroman |
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Not Collective
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Input Parameter:
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. st - the spectral transformation context
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Output Parameter:
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. name - name of the spectral transformation
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Level: intermediate
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.seealso: STSetType()
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@*/
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slepc |
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PetscErrorCode STGetType(ST st,const STType *type)
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dsic.upv.es!jroman |
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{
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PetscFunctionBegin;
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jroman |
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PetscValidHeaderSpecific(st,ST_CLASSID,1);
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slepc |
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PetscValidPointer(type,2);
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*type = ((PetscObject)st)->type_name;
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dsic.upv.es!jroman |
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STSetFromOptions"
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/*@
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STSetFromOptions - Sets ST options from the options database.
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This routine must be called before STSetUp() if the user is to be
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allowed to set the type of transformation.
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Collective on ST
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Input Parameter:
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. st - the spectral transformation context
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Level: beginner
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@*/
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dsic.upv.es!antodo |
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PetscErrorCode STSetFromOptions(ST st)
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dsic.upv.es!jroman |
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{
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dsic.upv.es!antodo |
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PetscErrorCode ierr;
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slepc |
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PetscInt i;
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jroman |
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PetscScalar s;
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dsic.upv.es!antodo |
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char type[256];
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jroman |
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PetscBool flg;
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jroman |
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const char *mode_list[3] = {"copy","inplace","shell"};
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const char *structure_list[3] = {"same","different","subset"};
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dsic.upv.es!jroman |
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PetscFunctionBegin;
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jroman |
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PetscValidHeaderSpecific(st,ST_CLASSID,1);
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jroman |
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if (!STRegisterAllCalled) { ierr = STRegisterAll(PETSC_NULL);CHKERRQ(ierr); }
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slepc |
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ierr = PetscOptionsBegin(((PetscObject)st)->comm,((PetscObject)st)->prefix,"Spectral Transformation (ST) Options","ST");CHKERRQ(ierr);
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ierr = PetscOptionsList("-st_type","Spectral Transformation type","STSetType",STList,(char*)(((PetscObject)st)->type_name?((PetscObject)st)->type_name:STSHIFT),type,256,&flg);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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if (flg) {
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ierr = STSetType(st,type);CHKERRQ(ierr);
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}
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/*
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Set the type if it was never set.
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*/
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slepc |
144 |
if (!((PetscObject)st)->type_name) {
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dsic.upv.es!antodo |
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ierr = STSetType(st,STSHIFT);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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}
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jroman |
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ierr = PetscOptionsScalar("-st_shift","Value of the shift","STSetShift",st->sigma,&s,&flg);CHKERRQ(ierr);
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if (flg) { ierr = STSetShift(st,s);CHKERRQ(ierr); }
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dsic.upv.es!jroman |
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jroman |
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ierr = PetscOptionsEList("-st_matmode","Shift matrix mode","STSetMatMode",mode_list,3,mode_list[st->shift_matrix],&i,&flg);CHKERRQ(ierr);
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dsic.upv.es!antodo |
152 |
if (flg) { st->shift_matrix = (STMatMode)i; }
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dsic.upv.es!antodo |
153 |
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jroman |
154 |
ierr = PetscOptionsEList("-st_matstructure","Shift nonzero pattern","STSetMatStructure",structure_list,3,structure_list[st->str],&i,&flg);CHKERRQ(ierr);
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jroman |
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if (flg) {
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switch (i) {
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case 0: ierr = STSetMatStructure(st,SAME_NONZERO_PATTERN);CHKERRQ(ierr); break;
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case 1: ierr = STSetMatStructure(st,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr); break;
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case 2: ierr = STSetMatStructure(st,SUBSET_NONZERO_PATTERN);CHKERRQ(ierr); break;
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}
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}
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dsic.upv.es!antodo |
162 |
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dsic.upv.es!jroman |
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if (st->ops->setfromoptions) {
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ierr = (*st->ops->setfromoptions)(st);CHKERRQ(ierr);
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}
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jroman |
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ierr = PetscObjectProcessOptionsHandlers((PetscObject)st);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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ierr = PetscOptionsEnd();CHKERRQ(ierr);
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eromero |
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ierr = KSPSetFromOptions(st->ksp);CHKERRQ(ierr);
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dsic.upv.es!jroman |
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PetscFunctionReturn(0);
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}
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dsic.upv.es!antodo |
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#undef __FUNCT__
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#define __FUNCT__ "STSetMatStructure"
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/*@
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STSetMatStructure - Sets an internal MatStructure attribute to
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indicate which is the relation of the sparsity pattern of the two matrices
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jroman |
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A and B constituting the generalized eigenvalue problem.
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dsic.upv.es!antodo |
178 |
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jroman |
179 |
Logically Collective on ST
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dsic.upv.es!antodo |
180 |
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Input Parameters:
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+ st - the spectral transformation context
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- str - either SAME_NONZERO_PATTERN, DIFFERENT_NONZERO_PATTERN or
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SUBSET_NONZERO_PATTERN
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Options Database Key:
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dsic.upv.es!jroman |
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. -st_matstructure <str> - Indicates the structure flag, where <str> is one
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of 'same' (A and B have the same nonzero pattern), 'different' (A
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jroman |
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and B have different nonzero pattern) or 'subset' (B's nonzero
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pattern is a subset of A's).
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dsic.upv.es!antodo |
191 |
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jroman |
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Notes:
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dsic.upv.es!antodo |
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By default, the sparsity patterns are assumed to be different. If the
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patterns are equal or a subset then it is recommended to set this attribute
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for efficiency reasons (in particular, for internal MatAXPY() operations).
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jroman |
196 |
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This function has no effect in the case of standard eigenproblems.
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dsic.upv.es!antodo |
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Level: advanced
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.seealso: STSetOperators(), MatAXPY()
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@*/
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dsic.upv.es!antodo |
203 |
PetscErrorCode STSetMatStructure(ST st,MatStructure str)
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dsic.upv.es!antodo |
204 |
{
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PetscFunctionBegin;
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jroman |
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PetscValidHeaderSpecific(st,ST_CLASSID,1);
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jroman |
207 |
PetscValidLogicalCollectiveEnum(st,str,2);
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slepc |
208 |
switch (str) {
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209 |
case SAME_NONZERO_PATTERN:
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210 |
case DIFFERENT_NONZERO_PATTERN:
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case SUBSET_NONZERO_PATTERN:
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st->str = str;
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break;
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default:
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jroman |
215 |
SETERRQ(((PetscObject)st)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Invalid matrix structure flag");
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slepc |
216 |
}
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dsic.upv.es!antodo |
217 |
PetscFunctionReturn(0);
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218 |
}
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219 |
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220 |
#undef __FUNCT__
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eromero |
221 |
#define __FUNCT__ "STGetMatStructure"
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222 |
/*@
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223 |
STGetMatStructure - Gets the internal MatStructure attribute to
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224 |
indicate which is the relation of the sparsity pattern of the two matrices
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jroman |
225 |
A and B constituting the generalized eigenvalue problem.
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| 2107 |
eromero |
226 |
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jroman |
227 |
Not Collective
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eromero |
228 |
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229 |
Input Parameters:
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. st - the spectral transformation context
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231 |
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232 |
Output Parameters:
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233 |
. str - either SAME_NONZERO_PATTERN, DIFFERENT_NONZERO_PATTERN or
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234 |
SUBSET_NONZERO_PATTERN
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235 |
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jroman |
236 |
Note:
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237 |
This function has no effect in the case of standard eigenproblems.
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238 |
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| 2107 |
eromero |
239 |
Level: advanced
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240 |
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241 |
.seealso: STSetMatStructure(), STSetOperators(), MatAXPY()
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242 |
@*/
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243 |
PetscErrorCode STGetMatStructure(ST st,MatStructure *str)
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244 |
{
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245 |
PetscFunctionBegin;
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jroman |
246 |
PetscValidHeaderSpecific(st,ST_CLASSID,1);
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| 2107 |
eromero |
247 |
PetscValidPointer(str,2);
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248 |
*str = st->str;
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249 |
PetscFunctionReturn(0);
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250 |
}
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251 |
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252 |
#undef __FUNCT__
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| 344 |
dsic.upv.es!antodo |
253 |
#define __FUNCT__ "STSetMatMode"
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254 |
/*@
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255 |
STSetMatMode - Sets a flag to indicate how the matrix is
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256 |
being shifted in the shift-and-invert and Cayley spectral transformations.
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257 |
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| 2328 |
jroman |
258 |
Logically Collective on ST
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| 344 |
dsic.upv.es!antodo |
259 |
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260 |
Input Parameters:
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261 |
+ st - the spectral transformation context
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| 1940 |
jroman |
262 |
- mode - the mode flag, one of ST_MATMODE_COPY,
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263 |
ST_MATMODE_INPLACE or ST_MATMODE_SHELL
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| 344 |
dsic.upv.es!antodo |
264 |
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265 |
Options Database Key:
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| 354 |
dsic.upv.es!jroman |
266 |
. -st_matmode <mode> - Indicates the mode flag, where <mode> is one of
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267 |
'copy', 'inplace' or 'shell' (see explanation below).
|
| 344 |
dsic.upv.es!antodo |
268 |
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| 354 |
dsic.upv.es!jroman |
269 |
Notes:
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| 1940 |
jroman |
270 |
By default (ST_MATMODE_COPY), a copy of matrix A is made and then
|
| 344 |
dsic.upv.es!antodo |
271 |
this copy is shifted explicitly, e.g. A <- (A - s B).
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272 |
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| 1940 |
jroman |
273 |
With ST_MATMODE_INPLACE, the original matrix A is shifted at
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| 344 |
dsic.upv.es!antodo |
274 |
STSetUp() and unshifted at the end of the computations. With respect to
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275 |
the previous one, this mode avoids a copy of matrix A. However, a
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276 |
backdraw is that the recovered matrix might be slightly different
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277 |
from the original one (due to roundoff).
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278 |
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| 1940 |
jroman |
279 |
With ST_MATMODE_SHELL, the solver works with an implicit shell
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| 344 |
dsic.upv.es!antodo |
280 |
matrix that represents the shifted matrix. This mode is the most efficient
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281 |
in creating the shifted matrix but it places serious limitations to the
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282 |
linear solves performed in each iteration of the eigensolver (typically,
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283 |
only interative solvers with Jacobi preconditioning can be used).
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284 |
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285 |
In the case of generalized problems, in the two first modes the matrix
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286 |
A - s B has to be computed explicitly. The efficiency of this computation
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| 354 |
dsic.upv.es!jroman |
287 |
can be controlled with STSetMatStructure().
|
| 344 |
dsic.upv.es!antodo |
288 |
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289 |
Level: intermediate
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290 |
|
| 1364 |
slepc |
291 |
.seealso: STSetOperators(), STSetMatStructure(), STGetMatMode(), STMatMode
|
| 344 |
dsic.upv.es!antodo |
292 |
@*/
|
| 476 |
dsic.upv.es!antodo |
293 |
PetscErrorCode STSetMatMode(ST st,STMatMode mode)
|
| 344 |
dsic.upv.es!antodo |
294 |
{
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|
295 |
PetscFunctionBegin;
|
| 2213 |
jroman |
296 |
PetscValidHeaderSpecific(st,ST_CLASSID,1);
|
| 2326 |
jroman |
297 |
PetscValidLogicalCollectiveEnum(st,mode,2);
|
| 344 |
dsic.upv.es!antodo |
298 |
st->shift_matrix = mode;
|
|
|
299 |
PetscFunctionReturn(0);
|
|
|
300 |
}
|
|
|
301 |
|
| 382 |
dsic.upv.es!antodo |
302 |
#undef __FUNCT__
|
| 444 |
dsic.upv.es!antodo |
303 |
#define __FUNCT__ "STGetMatMode"
|
| 707 |
dsic.upv.es!antodo |
304 |
/*@C
|
| 547 |
dsic.upv.es!jroman |
305 |
STGetMatMode - Gets a flag that indicates how the matrix is being
|
|
|
306 |
shifted in the shift-and-invert and Cayley spectral transformations.
|
|
|
307 |
|
| 2328 |
jroman |
308 |
Not Collective
|
| 547 |
dsic.upv.es!jroman |
309 |
|
|
|
310 |
Input Parameter:
|
|
|
311 |
. st - the spectral transformation context
|
|
|
312 |
|
|
|
313 |
Output Parameter:
|
|
|
314 |
. mode - the mode flag
|
|
|
315 |
|
|
|
316 |
Level: intermediate
|
|
|
317 |
|
| 1364 |
slepc |
318 |
.seealso: STSetMatMode(), STMatMode
|
| 547 |
dsic.upv.es!jroman |
319 |
@*/
|
| 476 |
dsic.upv.es!antodo |
320 |
PetscErrorCode STGetMatMode(ST st,STMatMode *mode)
|
| 444 |
dsic.upv.es!antodo |
321 |
{
|
|
|
322 |
PetscFunctionBegin;
|
| 2213 |
jroman |
323 |
PetscValidHeaderSpecific(st,ST_CLASSID,1);
|
| 2319 |
jroman |
324 |
PetscValidPointer(mode,2);
|
| 444 |
dsic.upv.es!antodo |
325 |
*mode = st->shift_matrix;
|
|
|
326 |
PetscFunctionReturn(0);
|
|
|
327 |
}
|
|
|
328 |
|