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dsic.upv.es!jroman |
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/*
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Implements the shift-and-invert technique for eigenvalue problems.
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*/
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#include "src/st/stimpl.h" /*I "slepcst.h" I*/
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#include "sinvert.h"
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typedef struct {
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PetscTruth shift_matrix; /* shift matrix rather than use shell mat */
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MatStructure str; /* whether matrices have the same pattern or not */
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Mat mat;
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Vec w;
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} ST_SINV;
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#undef __FUNCT__
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#define __FUNCT__ "STApply_Sinvert"
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static int STApply_Sinvert(ST st,Vec x,Vec y)
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{
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int ierr;
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ST_SINV *ctx = (ST_SINV *) st->data;
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PetscFunctionBegin;
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if (st->B) {
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/* generalized eigenproblem: y = (A - sB)^-1 B x */
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ierr = MatMult(st->B,x,ctx->w);CHKERRQ(ierr);
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ierr = STAssociatedSLESSolve(st,ctx->w,y);CHKERRQ(ierr);
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}
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else {
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/* standard eigenproblem: y = (A - sI)^-1 x */
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ierr = STAssociatedSLESSolve(st,x,y);CHKERRQ(ierr);
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}
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STApplyNoB_Sinvert"
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static int STApplyNoB_Sinvert(ST st,Vec x,Vec y)
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{
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int ierr;
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PetscFunctionBegin;
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ierr = STAssociatedSLESSolve(st,x,y);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STBackTransform_Sinvert"
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int STBackTransform_Sinvert(ST st,PetscScalar *eigr,PetscScalar *eigi)
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{
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PetscFunctionBegin;
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/* Note that this is not correct in the case of the RQI solver */
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if (eigr) *eigr = 1.0 / *eigr + st->sigma;
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STPost_Sinvert"
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int STPost_Sinvert(ST st)
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{
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ST_SINV *ctx = (ST_SINV *) st->data;
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PetscScalar alpha;
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int ierr;
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PetscFunctionBegin;
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if( ctx->shift_matrix ) {
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alpha = st->sigma;
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if( st->B ) { ierr = MatAXPY(&alpha,st->B,st->A,ctx->str);CHKERRQ(ierr); }
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else { ierr = MatShift( &alpha, st->A ); CHKERRQ(ierr); }
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st->setupcalled = 0;
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}
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STSetUp_Sinvert"
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static int STSetUp_Sinvert(ST st)
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{
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int ierr;
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ST_SINV *ctx = (ST_SINV *) st->data;
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PetscScalar alpha;
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PetscFunctionBegin;
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if (ctx->shift_matrix) {
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alpha = -st->sigma;
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if (st->B) { ierr = MatAXPY(&alpha,st->B,st->A,ctx->str);CHKERRQ(ierr); }
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else { ierr = MatShift(&alpha,st->A);CHKERRQ(ierr); }
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ierr = SLESSetOperators(st->sles,st->A,st->A,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr);
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}
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else {
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ierr = MatCreateMatSinvert(st,&ctx->mat);CHKERRQ(ierr);
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ierr = SLESSetOperators(st->sles,ctx->mat,ctx->mat,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr);
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}
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if (st->B && !ctx->w) { ierr = VecDuplicate(st->vec,&ctx->w);CHKERRQ(ierr); }
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ierr = SLESSetUp(st->sles,st->vec,st->vec);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STSetShift_Sinvert"
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static int STSetShift_Sinvert(ST st,PetscScalar newshift)
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{
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int ierr;
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ST_SINV *stctx = (ST_SINV *) st->data;
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PetscScalar alpha;
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CTX_SINV *ctx;
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PetscFunctionBegin;
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/* Nothing to be done if STSetUp has not been called yet */
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if (!st->setupcalled) PetscFunctionReturn(0);
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if (stctx->shift_matrix) {
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/* Undo previous operations */
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alpha = st->sigma;
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if (st->B) { ierr = MatAXPY(&alpha,st->B,st->A,stctx->str);CHKERRQ(ierr); }
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else { ierr = MatShift(&alpha,st->A);CHKERRQ(ierr); }
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/* Apply new shift */
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alpha = -newshift;
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if (st->B) { ierr = MatAXPY(&alpha,st->B,st->A,stctx->str);CHKERRQ(ierr); }
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else { ierr = MatShift(&alpha,st->A);CHKERRQ(ierr); }
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ierr = SLESSetOperators(st->sles,st->A,st->A,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
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}
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else {
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ierr = MatShellGetContext(stctx->mat,(void**)&ctx);CHKERRQ(ierr);
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ctx->sigma = newshift;
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ierr = SLESSetOperators(st->sles,stctx->mat,stctx->mat,SAME_NONZERO_PATTERN);CHKERRQ(ierr);
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}
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ierr = SLESSetUp(st->sles,st->vec,st->vec);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STDestroy_Sinvert"
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static int STDestroy_Sinvert(ST st)
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{
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ST_SINV *ctx = (ST_SINV *) st->data;
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int ierr;
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PetscFunctionBegin;
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if (!ctx->shift_matrix) { ierr = MatDestroy(ctx->mat);CHKERRQ(ierr); }
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if (st->B) { ierr = VecDestroy(ctx->w);CHKERRQ(ierr); }
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ierr = PetscFree(ctx);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STView_Sinvert"
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static int STView_Sinvert(ST st,PetscViewer viewer)
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{
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ST_SINV *ctx = (ST_SINV *) st->data;
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int ierr;
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PetscTruth isascii;
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char *str;
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PetscFunctionBegin;
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ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&isascii);CHKERRQ(ierr);
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if (!isascii) {
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SETERRQ1(1,"Viewer type %s not supported for STSINV",((PetscObject)viewer)->type_name);
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}
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if (ctx->shift_matrix) {
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ierr = PetscViewerASCIIPrintf(viewer,"Shifting the matrix and unshifting at exit\n");CHKERRQ(ierr);
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if (st->B) {
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switch (ctx->str) {
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case SAME_NONZERO_PATTERN: str = "same nonzero pattern";break;
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case DIFFERENT_NONZERO_PATTERN: str = "different nonzero pattern";break;
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case SUBSET_NONZERO_PATTERN: str = "subset nonzero pattern";break;
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}
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ierr = PetscViewerASCIIPrintf(viewer,"Matrices A and B have %s\n",str);CHKERRQ(ierr);
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}
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}
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "STSetFromOptions_Sinvert"
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static int STSetFromOptions_Sinvert(ST st)
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{
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int ierr;
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PetscTruth flg;
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PC pc;
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PetscFunctionBegin;
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ierr = PetscOptionsHead("ST Shift-and-invert Options");CHKERRQ(ierr);
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ierr = PetscOptionsName("-st_sinvert_shift_mat","Shift matrix explicitly","STSinvertSetShiftMat",&flg);CHKERRQ(ierr);
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if (flg) {
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ierr = STSinvertSetShiftMat(st);CHKERRQ(ierr);
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}
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else {
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/* if shift_mat is set then the default preconditioner is ILU,
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otherwise set Jacobi as the default */
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ierr = SLESGetPC(st->sles,&pc); CHKERRQ(ierr);
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ierr = PCSetType(pc,PCJACOBI);CHKERRQ(ierr);
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}
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ierr = PetscOptionsLogicalGroupBegin("-st_sinvert_same_pattern","same nonzero pattern","STSinvertSetMatStructure",&flg);CHKERRQ(ierr);
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if (flg) {ierr = STSinvertSetMatStructure(st,SAME_NONZERO_PATTERN);CHKERRQ(ierr);}
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ierr = PetscOptionsLogicalGroup("-st_sinvert_different_pattern","different nonzero pattern","STSinvertSetMatStructure",&flg);CHKERRQ(ierr);
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if (flg) {ierr = STSinvertSetMatStructure(st,DIFFERENT_NONZERO_PATTERN);CHKERRQ(ierr);}
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ierr = PetscOptionsLogicalGroupEnd("-st_sinvert_subset_pattern","subset nonzero pattern","STSinvertSetMatStructure",&flg);CHKERRQ(ierr);
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if (flg) {ierr = STSinvertSetMatStructure(st,SUBSET_NONZERO_PATTERN);CHKERRQ(ierr);}
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ierr = PetscOptionsTail();CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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/* -------------------------------------------------------------------------*/
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EXTERN_C_BEGIN
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#undef __FUNCT__
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#define __FUNCT__ "STSinvertSetShiftMat_Sinvert"
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int STSinvertSetShiftMat_Sinvert(ST st)
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{
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ST_SINV *ctx = (ST_SINV *) st->data;
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PetscFunctionBegin;
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ctx->shift_matrix = PETSC_TRUE;
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PetscFunctionReturn(0);
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}
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EXTERN_C_END
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#undef __FUNCT__
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#define __FUNCT__ "STSinvertSetShiftMat"
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/*@
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STSinvertSetShiftMat - Sets a flag to indicate that the matrix is
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being shifted at STSetUp() and unshifted at the end of the computations.
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Collective on ST
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Input Parameters:
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. st - the spectral transformation context
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Options Database Key:
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. -st_sinvert_shift_mat - Activates STSinvertSetShiftMat()
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Note:
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By default, the matrix is not shifted explicitly. Instead, the solver
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works with an implicit shell matrix that represents the shifted matrix,
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in which case only the Jacobi preconditioning is available for the linear
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solves performed in each iteration of the eigensolver.
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Level: intermediate
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.seealso: STSetOperators()
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@*/
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int STSinvertSetShiftMat(ST st)
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{
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int ierr, (*f)(ST);
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PetscFunctionBegin;
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PetscValidHeaderSpecific(st,ST_COOKIE);
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ierr = PetscObjectQueryFunction((PetscObject)st,"STSinvertSetShiftMat_C",(void (**)(void))&f);CHKERRQ(ierr);
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if (f) {
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ierr = (*f)(st);CHKERRQ(ierr);
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}
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PetscFunctionReturn(0);
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}
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EXTERN_C_BEGIN
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#undef __FUNCT__
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#define __FUNCT__ "STSinvertSetMatStructure_Sinvert"
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int STSinvertSetMatStructure_Sinvert(ST st,MatStructure str)
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{
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ST_SINV *ctx = (ST_SINV *) st->data;
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PetscFunctionBegin;
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ctx->str = str;
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PetscFunctionReturn(0);
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}
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EXTERN_C_END
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#undef __FUNCT__
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#define __FUNCT__ "STSinvertSetMatStructure"
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/*@
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STSinvertSetMatStructure - Sets an internal MatStructure attribute to
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indicate which is the relation of the sparsity pattern of the two matrices
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A and B constituting the generalized eigenvalue problem. This function
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has no effect in the case of standard eigenproblems.
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Collective on ST
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Input Parameters:
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+ st - the spectral transformation context
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- str - either SAME_NONZERO_PATTERN, DIFFERENT_NONZERO_PATTERN or
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SUBSET_NONZERO_PATTERN
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Options Database Key:
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+ -st_sinvert_same_pattern - Indicates A and B have the same nonzero pattern
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. -st_sinvert_different_pattern - Indicates A and B have different nonzero pattern
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- -st_sinvert_subset_pattern - Indicates B's nonzero pattern is a subset of B's
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Note:
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By default, the sparsity patterns are assumed to be different. If the
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patterns are equal or a subset then it is recommended to set this attribute
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for efficiency reasons (in particular, for internal MatAXPY operations).
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Level: advanced
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.seealso: STSetOperators()
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@*/
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int STSinvertSetMatStructure(ST st,MatStructure str)
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{
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int ierr, (*f)(ST,MatStructure);
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PetscFunctionBegin;
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PetscValidHeaderSpecific(st,ST_COOKIE);
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ierr = PetscObjectQueryFunction((PetscObject)st,"STSinvertSetMatStructure_C",(void (**)(void))&f);CHKERRQ(ierr);
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if (f) {
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ierr = (*f)(st,str);CHKERRQ(ierr);
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}
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PetscFunctionReturn(0);
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}
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/* ---------------------------------------------------------------------------*/
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EXTERN_C_BEGIN
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#undef __FUNCT__
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#define __FUNCT__ "STCreate_Sinvert"
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int STCreate_Sinvert(ST st)
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{
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int ierr;
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char *prefix;
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ST_SINV *ctx;
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PetscFunctionBegin;
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ierr = PetscNew(ST_SINV,&ctx); CHKERRQ(ierr);
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PetscMemzero(ctx,sizeof(ST_SINV));
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PetscLogObjectMemory(st,sizeof(ST_SINV));
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st->numberofshifts = 1;
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st->data = (void *) ctx;
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st->ops->apply = STApply_Sinvert;
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st->ops->applynoB = STApplyNoB_Sinvert;
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331 |
st->ops->postsolve = STPost_Sinvert;
|
|
|
332 |
st->ops->backtr = STBackTransform_Sinvert;
|
|
|
333 |
st->ops->setup = STSetUp_Sinvert;
|
|
|
334 |
st->ops->setshift = STSetShift_Sinvert;
|
|
|
335 |
st->ops->destroy = STDestroy_Sinvert;
|
|
|
336 |
st->ops->setfromoptions = STSetFromOptions_Sinvert;
|
|
|
337 |
st->ops->view = STView_Sinvert;
|
|
|
338 |
|
|
|
339 |
ierr = SLESCreate(st->comm,&st->sles);CHKERRQ(ierr);
|
|
|
340 |
ierr = STGetOptionsPrefix(st,&prefix);CHKERRQ(ierr);
|
|
|
341 |
ierr = SLESSetOptionsPrefix(st->sles,prefix);CHKERRQ(ierr);
|
|
|
342 |
ierr = SLESAppendOptionsPrefix(st->sles,"st_");CHKERRQ(ierr);
|
|
|
343 |
ctx->shift_matrix = PETSC_FALSE;
|
|
|
344 |
ctx->str = DIFFERENT_NONZERO_PATTERN;
|
|
|
345 |
|
|
|
346 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)st,"STSinvertSetShiftMat_C","STSinvertSetShiftMat_Sinvert",
|
|
|
347 |
STSinvertSetShiftMat_Sinvert);CHKERRQ(ierr);
|
|
|
348 |
ierr = PetscObjectComposeFunctionDynamic((PetscObject)st,"STSinvertSetMatStructure_C","STSinvertSetMatStructure_Sinvert",
|
|
|
349 |
STSinvertSetMatStructure_Sinvert);CHKERRQ(ierr);
|
|
|
350 |
|
|
|
351 |
PetscFunctionReturn(0);
|
|
|
352 |
}
|
|
|
353 |
EXTERN_C_END
|
|
|
354 |
|