| 2757 |
jroman |
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/*
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Basic PS routines
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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SLEPc - Scalable Library for Eigenvalue Problem Computations
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Copyright (c) 2002-2011, Universitat Politecnica de Valencia, Spain
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This file is part of SLEPc.
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SLEPc is free software: you can redistribute it and/or modify it under the
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terms of version 3 of the GNU Lesser General Public License as published by
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the Free Software Foundation.
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SLEPc is distributed in the hope that it will be useful, but WITHOUT ANY
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WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for
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more details.
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You should have received a copy of the GNU Lesser General Public License
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along with SLEPc. If not, see <http://www.gnu.org/licenses/>.
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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*/
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#include <slepc-private/psimpl.h> /*I "slepcps.h" I*/
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PetscFList PSList = 0;
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PetscBool PSRegisterAllCalled = PETSC_FALSE;
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PetscClassId PS_CLASSID = 0;
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| 2807 |
jroman |
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PetscLogEvent PS_Solve = 0,PS_Sort = 0,PS_Vectors = 0,PS_Other = 0;
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| 2757 |
jroman |
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static PetscBool PSPackageInitialized = PETSC_FALSE;
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| 2777 |
jroman |
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const char *PSMatName[PS_NUM_MAT] = {"A","B","C","T","Q","X","Y","U","VT","W"};
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| 2757 |
jroman |
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#undef __FUNCT__
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#define __FUNCT__ "PSFinalizePackage"
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/*@C
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PSFinalizePackage - This function destroys everything in the Slepc interface
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to the PS package. It is called from SlepcFinalize().
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Level: developer
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.seealso: SlepcFinalize()
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@*/
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PetscErrorCode PSFinalizePackage(void)
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{
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PetscFunctionBegin;
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PSPackageInitialized = PETSC_FALSE;
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PSList = 0;
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PSRegisterAllCalled = PETSC_FALSE;
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSInitializePackage"
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/*@C
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PSInitializePackage - This function initializes everything in the PS package.
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It is called from PetscDLLibraryRegister() when using dynamic libraries, and
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on the first call to PSCreate() when using static libraries.
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Input Parameter:
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path - The dynamic library path, or PETSC_NULL
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Level: developer
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.seealso: SlepcInitialize()
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@*/
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PetscErrorCode PSInitializePackage(const char *path)
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{
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char logList[256];
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char *className;
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PetscBool opt;
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PetscErrorCode ierr;
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PetscFunctionBegin;
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if (PSPackageInitialized) PetscFunctionReturn(0);
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PSPackageInitialized = PETSC_TRUE;
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/* Register Classes */
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ierr = PetscClassIdRegister("Projected system",&PS_CLASSID);CHKERRQ(ierr);
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/* Register Constructors */
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ierr = PSRegisterAll(path);CHKERRQ(ierr);
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/* Register Events */
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ierr = PetscLogEventRegister("PSSolve",PS_CLASSID,&PS_Solve);CHKERRQ(ierr);
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ierr = PetscLogEventRegister("PSSort",PS_CLASSID,&PS_Sort);CHKERRQ(ierr);
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jroman |
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ierr = PetscLogEventRegister("PSVectors",PS_CLASSID,&PS_Vectors);CHKERRQ(ierr);
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jroman |
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ierr = PetscLogEventRegister("PSOther",PS_CLASSID,&PS_Other);CHKERRQ(ierr);
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jroman |
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/* Process info exclusions */
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ierr = PetscOptionsGetString(PETSC_NULL,"-info_exclude",logList,256,&opt);CHKERRQ(ierr);
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if (opt) {
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ierr = PetscStrstr(logList,"ps",&className);CHKERRQ(ierr);
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if (className) {
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ierr = PetscInfoDeactivateClass(PS_CLASSID);CHKERRQ(ierr);
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}
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}
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/* Process summary exclusions */
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ierr = PetscOptionsGetString(PETSC_NULL,"-log_summary_exclude",logList,256,&opt);CHKERRQ(ierr);
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if (opt) {
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ierr = PetscStrstr(logList,"ps",&className);CHKERRQ(ierr);
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if (className) {
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ierr = PetscLogEventDeactivateClass(PS_CLASSID);CHKERRQ(ierr);
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}
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}
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ierr = PetscRegisterFinalize(PSFinalizePackage);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSCreate"
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/*@C
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PSCreate - Creates a PS context.
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Collective on MPI_Comm
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Input Parameter:
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. comm - MPI communicator
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Output Parameter:
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. newps - location to put the PS context
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Level: beginner
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Note:
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PS objects are not intended for normal users but only for
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advanced user that for instance implement their own solvers.
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.seealso: PSDestroy(), PS
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@*/
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PetscErrorCode PSCreate(MPI_Comm comm,PS *newps)
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{
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PS ps;
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PetscInt i;
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PetscErrorCode ierr;
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PetscFunctionBegin;
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PetscValidPointer(newps,2);
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ierr = PetscHeaderCreate(ps,_p_PS,struct _PSOps,PS_CLASSID,-1,"PS","Projected System","PS",comm,PSDestroy,PSView);CHKERRQ(ierr);
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jroman |
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*newps = ps;
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ps->state = PS_STATE_RAW;
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ps->method = 0;
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ps->nmeth = 1;
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ps->compact = PETSC_FALSE;
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jroman |
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ps->refined = PETSC_FALSE;
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jroman |
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ps->ld = 0;
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ps->l = 0;
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ps->n = 0;
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ps->k = 0;
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jroman |
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for (i=0;i<PS_NUM_MAT;i++) {
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jroman |
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ps->mat[i] = PETSC_NULL;
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jroman |
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ps->rmat[i] = PETSC_NULL;
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}
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jroman |
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ps->work = PETSC_NULL;
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ps->rwork = PETSC_NULL;
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ps->iwork = PETSC_NULL;
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ps->lwork = 0;
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ps->lrwork = 0;
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ps->liwork = 0;
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jroman |
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSSetOptionsPrefix"
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/*@C
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PSSetOptionsPrefix - Sets the prefix used for searching for all
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PS options in the database.
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Logically Collective on PS
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Input Parameters:
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+ ps - the projected system context
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- prefix - the prefix string to prepend to all PS option requests
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Notes:
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A hyphen (-) must NOT be given at the beginning of the prefix name.
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The first character of all runtime options is AUTOMATICALLY the
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hyphen.
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Level: advanced
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.seealso: PSAppendOptionsPrefix()
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@*/
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PetscErrorCode PSSetOptionsPrefix(PS ps,const char *prefix)
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{
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PetscErrorCode ierr;
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PetscFunctionBegin;
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PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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ierr = PetscObjectSetOptionsPrefix((PetscObject)ps,prefix);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSAppendOptionsPrefix"
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/*@C
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PSAppendOptionsPrefix - Appends to the prefix used for searching for all
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PS options in the database.
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Logically Collective on PS
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Input Parameters:
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+ ps - the projected system context
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- prefix - the prefix string to prepend to all PS option requests
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Notes:
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A hyphen (-) must NOT be given at the beginning of the prefix name.
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The first character of all runtime options is AUTOMATICALLY the hyphen.
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Level: advanced
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.seealso: PSSetOptionsPrefix()
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@*/
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PetscErrorCode PSAppendOptionsPrefix(PS ps,const char *prefix)
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{
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PetscErrorCode ierr;
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PetscFunctionBegin;
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PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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ierr = PetscObjectAppendOptionsPrefix((PetscObject)ps,prefix);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSGetOptionsPrefix"
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/*@C
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PSGetOptionsPrefix - Gets the prefix used for searching for all
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PS options in the database.
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Not Collective
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Input Parameters:
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. ps - the projected system context
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Output Parameters:
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. prefix - pointer to the prefix string used is returned
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Notes: On the fortran side, the user should pass in a string 'prefix' of
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sufficient length to hold the prefix.
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Level: advanced
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.seealso: PSSetOptionsPrefix(), PSAppendOptionsPrefix()
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@*/
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PetscErrorCode PSGetOptionsPrefix(PS ps,const char *prefix[])
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{
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PetscErrorCode ierr;
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PetscFunctionBegin;
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PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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PetscValidPointer(prefix,2);
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ierr = PetscObjectGetOptionsPrefix((PetscObject)ps,prefix);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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#undef __FUNCT__
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#define __FUNCT__ "PSSetType"
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/*@C
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PSSetType - Selects the type for the PS object.
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Logically Collective on PS
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Input Parameter:
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| 2793 |
jroman |
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+ ps - the projected system context
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jroman |
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- type - a known type
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Level: advanced
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.seealso: PSGetType()
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@*/
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PetscErrorCode PSSetType(PS ps,const PSType type)
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{
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PetscErrorCode ierr,(*r)(PS);
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PetscBool match;
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PetscFunctionBegin;
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PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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PetscValidCharPointer(type,2);
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ierr = PetscTypeCompare((PetscObject)ps,type,&match);CHKERRQ(ierr);
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if (match) PetscFunctionReturn(0);
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ierr = PetscFListFind(PSList,((PetscObject)ps)->comm,type,PETSC_TRUE,(void (**)(void))&r);CHKERRQ(ierr);
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if (!r) SETERRQ1(((PetscObject)ps)->comm,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PS type %s",type);
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ierr = PetscMemzero(ps->ops,sizeof(struct _PSOps));CHKERRQ(ierr);
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ierr = PetscObjectChangeTypeName((PetscObject)ps,type);CHKERRQ(ierr);
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ierr = (*r)(ps);CHKERRQ(ierr);
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PetscFunctionReturn(0);
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}
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287 |
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#undef __FUNCT__
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#define __FUNCT__ "PSGetType"
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/*@C
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PSGetType - Gets the PS type name (as a string) from the PS context.
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Not Collective
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294 |
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Input Parameter:
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. ps - the projected system context
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Output Parameter:
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. name - name of the projected system
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Level: advanced
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302 |
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.seealso: PSSetType()
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@*/
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PetscErrorCode PSGetType(PS ps,const PSType *type)
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{
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307 |
PetscFunctionBegin;
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308 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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PetscValidPointer(type,2);
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*type = ((PetscObject)ps)->type_name;
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311 |
PetscFunctionReturn(0);
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312 |
}
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313 |
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314 |
#undef __FUNCT__
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| 2793 |
jroman |
315 |
#define __FUNCT__ "PSSetMethod"
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| 2794 |
jroman |
316 |
/*@
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jroman |
317 |
PSSetMethod - Selects the method to be used to solve the problem.
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318 |
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319 |
Logically Collective on PS
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320 |
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Input Parameter:
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322 |
+ ps - the projected system context
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- meth - an index indentifying the method
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324 |
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Level: advanced
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326 |
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.seealso: PSGetMethod()
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@*/
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329 |
PetscErrorCode PSSetMethod(PS ps,PetscInt meth)
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330 |
{
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331 |
PetscFunctionBegin;
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332 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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333 |
PetscValidLogicalCollectiveInt(ps,meth,2);
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334 |
if (meth<0) SETERRQ(((PetscObject)ps)->comm,PETSC_ERR_ARG_OUTOFRANGE,"The method must be a non-negative integer");
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335 |
ps->method = meth;
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336 |
PetscFunctionReturn(0);
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337 |
}
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338 |
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339 |
#undef __FUNCT__
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340 |
#define __FUNCT__ "PSGetMethod"
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| 2794 |
jroman |
341 |
/*@
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| 2793 |
jroman |
342 |
PSGetMethod - Gets the method currently used in the PS.
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343 |
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344 |
Not Collective
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345 |
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346 |
Input Parameter:
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347 |
. ps - the projected system context
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348 |
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349 |
Output Parameter:
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350 |
. meth - identifier of the method
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351 |
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352 |
Level: advanced
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353 |
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354 |
.seealso: PSSetMethod()
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355 |
@*/
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356 |
PetscErrorCode PSGetMethod(PS ps,PetscInt *meth)
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357 |
{
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358 |
PetscFunctionBegin;
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359 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
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|
|
360 |
PetscValidPointer(meth,2);
|
|
|
361 |
*meth = ps->method;
|
|
|
362 |
PetscFunctionReturn(0);
|
|
|
363 |
}
|
|
|
364 |
|
|
|
365 |
#undef __FUNCT__
|
| 2794 |
jroman |
366 |
#define __FUNCT__ "PSSetCompact"
|
|
|
367 |
/*@
|
|
|
368 |
PSSetCompact - Switch to compact storage of matrices.
|
|
|
369 |
|
|
|
370 |
Logically Collective on PS
|
|
|
371 |
|
|
|
372 |
Input Parameter:
|
|
|
373 |
+ ps - the projected system context
|
|
|
374 |
- comp - a boolean flag
|
|
|
375 |
|
|
|
376 |
Notes:
|
|
|
377 |
Compact storage is used in some PS types such as PSHEP when the matrix
|
|
|
378 |
is tridiagonal. This flag can be used to indicate whether the user
|
|
|
379 |
provides the matrix entries via the compact form (the tridiagonal PS_MAT_T)
|
|
|
380 |
or the non-compact one (PS_MAT_A).
|
|
|
381 |
|
|
|
382 |
The default is PETSC_FALSE.
|
|
|
383 |
|
|
|
384 |
Level: advanced
|
|
|
385 |
|
|
|
386 |
.seealso: PSGetCompact()
|
|
|
387 |
@*/
|
|
|
388 |
PetscErrorCode PSSetCompact(PS ps,PetscBool comp)
|
|
|
389 |
{
|
|
|
390 |
PetscFunctionBegin;
|
|
|
391 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
392 |
PetscValidLogicalCollectiveBool(ps,comp,2);
|
|
|
393 |
ps->compact = comp;
|
|
|
394 |
PetscFunctionReturn(0);
|
|
|
395 |
}
|
|
|
396 |
|
|
|
397 |
#undef __FUNCT__
|
|
|
398 |
#define __FUNCT__ "PSGetCompact"
|
|
|
399 |
/*@
|
|
|
400 |
PSGetCompact - Gets the compact storage flag.
|
|
|
401 |
|
|
|
402 |
Not Collective
|
|
|
403 |
|
|
|
404 |
Input Parameter:
|
|
|
405 |
. ps - the projected system context
|
|
|
406 |
|
|
|
407 |
Output Parameter:
|
|
|
408 |
. comp - the flag
|
|
|
409 |
|
|
|
410 |
Level: advanced
|
|
|
411 |
|
|
|
412 |
.seealso: PSSetCompact()
|
|
|
413 |
@*/
|
|
|
414 |
PetscErrorCode PSGetCompact(PS ps,PetscBool *comp)
|
|
|
415 |
{
|
|
|
416 |
PetscFunctionBegin;
|
|
|
417 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
418 |
PetscValidPointer(comp,2);
|
|
|
419 |
*comp = ps->compact;
|
|
|
420 |
PetscFunctionReturn(0);
|
|
|
421 |
}
|
|
|
422 |
|
|
|
423 |
#undef __FUNCT__
|
| 2815 |
jroman |
424 |
#define __FUNCT__ "PSSetRefined"
|
|
|
425 |
/*@
|
|
|
426 |
PSSetRefined - Sets a flag to indicate that refined vectors must be
|
|
|
427 |
computed.
|
|
|
428 |
|
|
|
429 |
Logically Collective on PS
|
|
|
430 |
|
|
|
431 |
Input Parameter:
|
|
|
432 |
+ ps - the projected system context
|
|
|
433 |
- ref - a boolean flag
|
|
|
434 |
|
|
|
435 |
Notes:
|
|
|
436 |
Normally the vectors returned in PS_MAT_X are eigenvectors of the
|
|
|
437 |
projected matrix. With this flag activated, PSVectors() will return
|
|
|
438 |
the right singular vector of the smallest singular value of matrix
|
|
|
439 |
\tilde{A}-theta*I, where \tilde{A} is the extended (n+1)xn matrix
|
|
|
440 |
and theta is the Ritz value. This is used in the refined Ritz
|
|
|
441 |
approximation.
|
|
|
442 |
|
|
|
443 |
The default is PETSC_FALSE.
|
|
|
444 |
|
|
|
445 |
Level: advanced
|
|
|
446 |
|
|
|
447 |
.seealso: PSVectors(), PSGetRefined()
|
|
|
448 |
@*/
|
|
|
449 |
PetscErrorCode PSSetRefined(PS ps,PetscBool ref)
|
|
|
450 |
{
|
|
|
451 |
PetscFunctionBegin;
|
|
|
452 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
453 |
PetscValidLogicalCollectiveBool(ps,ref,2);
|
|
|
454 |
ps->refined = ref;
|
|
|
455 |
PetscFunctionReturn(0);
|
|
|
456 |
}
|
|
|
457 |
|
|
|
458 |
#undef __FUNCT__
|
|
|
459 |
#define __FUNCT__ "PSGetRefined"
|
|
|
460 |
/*@
|
|
|
461 |
PSGetRefined - Gets the refined vectors flag.
|
|
|
462 |
|
|
|
463 |
Not Collective
|
|
|
464 |
|
|
|
465 |
Input Parameter:
|
|
|
466 |
. ps - the projected system context
|
|
|
467 |
|
|
|
468 |
Output Parameter:
|
|
|
469 |
. comp - the flag
|
|
|
470 |
|
|
|
471 |
Level: advanced
|
|
|
472 |
|
|
|
473 |
.seealso: PSSetRefined()
|
|
|
474 |
@*/
|
|
|
475 |
PetscErrorCode PSGetRefined(PS ps,PetscBool *ref)
|
|
|
476 |
{
|
|
|
477 |
PetscFunctionBegin;
|
|
|
478 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
479 |
PetscValidPointer(ref,2);
|
|
|
480 |
*ref = ps->refined;
|
|
|
481 |
PetscFunctionReturn(0);
|
|
|
482 |
}
|
|
|
483 |
|
|
|
484 |
#undef __FUNCT__
|
| 2757 |
jroman |
485 |
#define __FUNCT__ "PSSetFromOptions"
|
|
|
486 |
/*@
|
|
|
487 |
PSSetFromOptions - Sets PS options from the options database.
|
|
|
488 |
|
|
|
489 |
Collective on PS
|
|
|
490 |
|
|
|
491 |
Input Parameters:
|
|
|
492 |
. ps - the projected system context
|
|
|
493 |
|
|
|
494 |
Notes:
|
|
|
495 |
To see all options, run your program with the -help option.
|
|
|
496 |
|
|
|
497 |
Level: beginner
|
|
|
498 |
@*/
|
|
|
499 |
PetscErrorCode PSSetFromOptions(PS ps)
|
|
|
500 |
{
|
|
|
501 |
PetscErrorCode ierr;
|
| 2795 |
jroman |
502 |
PetscInt meth;
|
| 2757 |
jroman |
503 |
|
|
|
504 |
PetscFunctionBegin;
|
|
|
505 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
506 |
if (!PSRegisterAllCalled) { ierr = PSRegisterAll(PETSC_NULL);CHKERRQ(ierr); }
|
|
|
507 |
/* Set default type (we do not allow changing it with -ps_type) */
|
|
|
508 |
if (!((PetscObject)ps)->type_name) {
|
| 2758 |
jroman |
509 |
ierr = PSSetType(ps,PSNHEP);CHKERRQ(ierr);
|
| 2757 |
jroman |
510 |
}
|
|
|
511 |
ierr = PetscOptionsBegin(((PetscObject)ps)->comm,((PetscObject)ps)->prefix,"Projecte System (PS) Options","PS");CHKERRQ(ierr);
|
| 2795 |
jroman |
512 |
meth = 0;
|
|
|
513 |
ierr = PetscOptionsInt("-ps_method","Method to be used for the projected system","PSSetMethod",ps->method,&meth,PETSC_NULL);CHKERRQ(ierr);
|
|
|
514 |
ierr = PSSetMethod(ps,meth);CHKERRQ(ierr);
|
| 2757 |
jroman |
515 |
ierr = PetscObjectProcessOptionsHandlers((PetscObject)ps);CHKERRQ(ierr);
|
|
|
516 |
ierr = PetscOptionsEnd();CHKERRQ(ierr);
|
|
|
517 |
PetscFunctionReturn(0);
|
|
|
518 |
}
|
|
|
519 |
|
|
|
520 |
#undef __FUNCT__
|
|
|
521 |
#define __FUNCT__ "PSView"
|
|
|
522 |
/*@C
|
|
|
523 |
PSView - Prints the PS data structure.
|
|
|
524 |
|
|
|
525 |
Collective on PS
|
|
|
526 |
|
|
|
527 |
Input Parameters:
|
|
|
528 |
+ ps - the projected system context
|
|
|
529 |
- viewer - optional visualization context
|
|
|
530 |
|
|
|
531 |
Note:
|
|
|
532 |
The available visualization contexts include
|
|
|
533 |
+ PETSC_VIEWER_STDOUT_SELF - standard output (default)
|
|
|
534 |
- PETSC_VIEWER_STDOUT_WORLD - synchronized standard
|
|
|
535 |
output where only the first processor opens
|
|
|
536 |
the file. All other processors send their
|
|
|
537 |
data to the first processor to print.
|
|
|
538 |
|
|
|
539 |
The user can open an alternative visualization context with
|
|
|
540 |
PetscViewerASCIIOpen() - output to a specified file.
|
|
|
541 |
|
|
|
542 |
Level: beginner
|
|
|
543 |
|
|
|
544 |
.seealso: PetscViewerASCIIOpen()
|
|
|
545 |
@*/
|
|
|
546 |
PetscErrorCode PSView(PS ps,PetscViewer viewer)
|
|
|
547 |
{
|
| 2777 |
jroman |
548 |
PetscBool isascii;
|
|
|
549 |
const char *state;
|
|
|
550 |
PetscViewerFormat format;
|
|
|
551 |
PetscErrorCode ierr;
|
| 2757 |
jroman |
552 |
|
|
|
553 |
PetscFunctionBegin;
|
|
|
554 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
555 |
if (!viewer) viewer = PETSC_VIEWER_STDOUT_(((PetscObject)ps)->comm);
|
|
|
556 |
PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
|
|
|
557 |
PetscCheckSameComm(ps,1,viewer,2);
|
|
|
558 |
ierr = PetscTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&isascii);CHKERRQ(ierr);
|
|
|
559 |
if (isascii) {
|
| 2777 |
jroman |
560 |
ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
|
| 2757 |
jroman |
561 |
ierr = PetscObjectPrintClassNamePrefixType((PetscObject)ps,viewer,"PS Object");CHKERRQ(ierr);
|
| 2777 |
jroman |
562 |
if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
|
|
|
563 |
switch (ps->state) {
|
|
|
564 |
case PS_STATE_RAW: state = "raw"; break;
|
|
|
565 |
case PS_STATE_INTERMEDIATE: state = "intermediate"; break;
|
|
|
566 |
case PS_STATE_CONDENSED: state = "condensed"; break;
|
|
|
567 |
case PS_STATE_SORTED: state = "sorted"; break;
|
|
|
568 |
default: SETERRQ(((PetscObject)ps)->comm,1,"Wrong value of ps->state");
|
|
|
569 |
}
|
|
|
570 |
ierr = PetscViewerASCIIPrintf(viewer," current state: %s\n",state);CHKERRQ(ierr);
|
|
|
571 |
ierr = PetscViewerASCIIPrintf(viewer," dimensions: ld=%d, n=%d, l=%d, k=%d\n",ps->ld,ps->n,ps->l,ps->k);CHKERRQ(ierr);
|
|
|
572 |
}
|
|
|
573 |
if (ps->ops->view) {
|
|
|
574 |
ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
|
|
|
575 |
ierr = (*ps->ops->view)(ps,viewer);CHKERRQ(ierr);
|
|
|
576 |
ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
|
|
|
577 |
}
|
| 2762 |
jroman |
578 |
} else SETERRQ1(((PetscObject)ps)->comm,1,"Viewer type %s not supported for PS",((PetscObject)viewer)->type_name);
|
| 2757 |
jroman |
579 |
PetscFunctionReturn(0);
|
|
|
580 |
}
|
|
|
581 |
|
|
|
582 |
#undef __FUNCT__
|
| 2758 |
jroman |
583 |
#define __FUNCT__ "PSAllocate"
|
|
|
584 |
/*@
|
|
|
585 |
PSAllocate - Allocates memory for internal storage or matrices in PS.
|
|
|
586 |
|
| 2807 |
jroman |
587 |
Logically Collective on PS
|
| 2758 |
jroman |
588 |
|
|
|
589 |
Input Parameters:
|
|
|
590 |
+ ps - the projected system context
|
|
|
591 |
- ld - leading dimension (maximum allowed dimension for the matrices)
|
|
|
592 |
|
|
|
593 |
Level: advanced
|
|
|
594 |
|
|
|
595 |
.seealso: PSGetLeadingDimension(), PSSetDimensions()
|
|
|
596 |
@*/
|
|
|
597 |
PetscErrorCode PSAllocate(PS ps,PetscInt ld)
|
|
|
598 |
{
|
|
|
599 |
PetscErrorCode ierr;
|
|
|
600 |
|
|
|
601 |
PetscFunctionBegin;
|
|
|
602 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
|
|
603 |
PetscValidLogicalCollectiveInt(ps,ld,2);
|
|
|
604 |
if (ld<1) SETERRQ(((PetscObject)ps)->comm,PETSC_ERR_ARG_OUTOFRANGE,"Leading dimension should be at least one");
|
|
|
605 |
ps->ld = ld;
|
|
|
606 |
ierr = (*ps->ops->allocate)(ps,ld);CHKERRQ(ierr);
|
|
|
607 |
PetscFunctionReturn(0);
|
|
|
608 |
}
|
|
|
609 |
|
|
|
610 |
#undef __FUNCT__
|
|
|
611 |
#define __FUNCT__ "PSAllocateMat_Private"
|
|
|
612 |
PetscErrorCode PSAllocateMat_Private(PS ps,PSMatType m)
|
|
|
613 |
{
|
| 2764 |
jroman |
614 |
PetscInt sz;
|
| 2758 |
jroman |
615 |
PetscErrorCode ierr;
|
|
|
616 |
|
|
|
617 |
PetscFunctionBegin;
|
| 2775 |
jroman |
618 |
if (m==PS_MAT_T) sz = 3*ps->ld*sizeof(PetscScalar);
|
|
|
619 |
else sz = ps->ld*ps->ld*sizeof(PetscScalar);
|
| 2770 |
jroman |
620 |
if (ps->mat[m]) { ierr = PetscFree(ps->mat[m]);CHKERRQ(ierr); }
|
|
|
621 |
else { ierr = PetscLogObjectMemory(ps,sz);CHKERRQ(ierr); }
|
| 2758 |
jroman |
622 |
ierr = PetscMalloc(sz,&ps->mat[m]);CHKERRQ(ierr);
|
|
|
623 |
ierr = PetscMemzero(ps->mat[m],sz);CHKERRQ(ierr);
|
|
|
624 |
PetscFunctionReturn(0);
|
|
|
625 |
}
|
|
|
626 |
|
|
|
627 |
#undef __FUNCT__
|
| 2775 |
jroman |
628 |
#define __FUNCT__ "PSAllocateMatReal_Private"
|
|
|
629 |
PetscErrorCode PSAllocateMatReal_Private(PS ps,PSMatType m)
|
|
|
630 |
{
|
|
|
631 |
PetscInt sz;
|
|
|
632 |
PetscErrorCode ierr;
|
|
|
633 |
|
|
|
634 |
PetscFunctionBegin;
|
|
|
635 |
if (m==PS_MAT_T) sz = 3*ps->ld*sizeof(PetscReal);
|
|
|
636 |
else sz = ps->ld*ps->ld*sizeof(PetscReal);
|
|
|
637 |
if (ps->rmat[m]) { ierr = PetscFree(ps->rmat[m]);CHKERRQ(ierr); }
|
|
|
638 |
else { ierr = PetscLogObjectMemory(ps,sz);CHKERRQ(ierr); }
|
|
|
639 |
ierr = PetscMalloc(sz,&ps->rmat[m]);CHKERRQ(ierr);
|
|
|
640 |
ierr = PetscMemzero(ps->rmat[m],sz);CHKERRQ(ierr);
|
|
|
641 |
PetscFunctionReturn(0);
|
|
|
642 |
}
|
|
|
643 |
|
|
|
644 |
#undef __FUNCT__
|
| 2770 |
jroman |
645 |
#define __FUNCT__ "PSAllocateWork_Private"
|
|
|
646 |
PetscErrorCode PSAllocateWork_Private(PS ps,PetscInt s,PetscInt r,PetscInt i)
|
|
|
647 |
{
|
|
|
648 |
PetscErrorCode ierr;
|
|
|
649 |
|
|
|
650 |
PetscFunctionBegin;
|
|
|
651 |
if (s>ps->lwork) {
|
|
|
652 |
ierr = PetscFree(ps->work);CHKERRQ(ierr);
|
|
|
653 |
ierr = PetscMalloc(s*sizeof(PetscScalar),&ps->work);CHKERRQ(ierr);
|
|
|
654 |
ierr = PetscLogObjectMemory(ps,(s-ps->lwork)*sizeof(PetscScalar));CHKERRQ(ierr);
|
|
|
655 |
ps->lwork = s;
|
|
|
656 |
}
|
|
|
657 |
if (r>ps->lrwork) {
|
|
|
658 |
ierr = PetscFree(ps->rwork);CHKERRQ(ierr);
|
|
|
659 |
ierr = PetscMalloc(r*sizeof(PetscReal),&ps->rwork);CHKERRQ(ierr);
|
|
|
660 |
ierr = PetscLogObjectMemory(ps,(r-ps->lrwork)*sizeof(PetscReal));CHKERRQ(ierr);
|
|
|
661 |
ps->lrwork = r;
|
|
|
662 |
}
|
|
|
663 |
if (i>ps->liwork) {
|
|
|
664 |
ierr = PetscFree(ps->iwork);CHKERRQ(ierr);
|
|
|
665 |
ierr = PetscMalloc(i*sizeof(PetscBLASInt),&ps->iwork);CHKERRQ(ierr);
|
|
|
666 |
ierr = PetscLogObjectMemory(ps,(i-ps->liwork)*sizeof(PetscBLASInt));CHKERRQ(ierr);
|
|
|
667 |
ps->liwork = i;
|
|
|
668 |
}
|
|
|
669 |
PetscFunctionReturn(0);
|
|
|
670 |
}
|
|
|
671 |
|
|
|
672 |
#undef __FUNCT__
|
| 2777 |
jroman |
673 |
#define __FUNCT__ "PSViewMat_Private"
|
|
|
674 |
PetscErrorCode PSViewMat_Private(PS ps,PetscViewer viewer,PSMatType m)
|
|
|
675 |
{
|
| 2785 |
jroman |
676 |
PetscErrorCode ierr;
|
|
|
677 |
PetscInt i,j;
|
|
|
678 |
PetscScalar *v;
|
| 2783 |
jroman |
679 |
PetscViewerFormat format;
|
| 2785 |
jroman |
680 |
#if defined(PETSC_USE_COMPLEX)
|
|
|
681 |
PetscBool allreal = PETSC_TRUE;
|
|
|
682 |
#endif
|
| 2777 |
jroman |
683 |
|
|
|
684 |
PetscFunctionBegin;
|
| 2783 |
jroman |
685 |
ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
|
|
|
686 |
if (format == PETSC_VIEWER_ASCII_INFO || format == PETSC_VIEWER_ASCII_INFO_DETAIL) PetscFunctionReturn(0);
|
| 2785 |
jroman |
687 |
ierr = PetscViewerASCIIUseTabs(viewer,PETSC_FALSE);CHKERRQ(ierr);
|
|
|
688 |
#if defined(PETSC_USE_COMPLEX)
|
|
|
689 |
/* determine if matrix has all real values */
|
|
|
690 |
v = ps->mat[m];
|
|
|
691 |
for (i=0;i<ps->n;i++)
|
|
|
692 |
for (j=0;j<ps->n;j++)
|
|
|
693 |
if (PetscImaginaryPart(v[i+j*ps->ld])) { allreal = PETSC_FALSE; break; }
|
|
|
694 |
#endif
|
|
|
695 |
if (format == PETSC_VIEWER_ASCII_MATLAB) {
|
|
|
696 |
ierr = PetscViewerASCIIPrintf(viewer,"%% Size = %D %D\n",ps->n,ps->n);CHKERRQ(ierr);
|
|
|
697 |
ierr = PetscViewerASCIIPrintf(viewer,"%s = [\n",PSMatName[m]);CHKERRQ(ierr);
|
|
|
698 |
} else {
|
|
|
699 |
ierr = PetscViewerASCIIPrintf(viewer,"Matrix %s =\n",PSMatName[m]);CHKERRQ(ierr);
|
|
|
700 |
}
|
|
|
701 |
|
|
|
702 |
for (i=0;i<ps->n;i++) {
|
|
|
703 |
v = ps->mat[m]+i;
|
|
|
704 |
for (j=0;j<ps->n;j++) {
|
|
|
705 |
#if defined(PETSC_USE_COMPLEX)
|
|
|
706 |
if (allreal) {
|
|
|
707 |
ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",PetscRealPart(*v));CHKERRQ(ierr);
|
|
|
708 |
} else {
|
|
|
709 |
ierr = PetscViewerASCIIPrintf(viewer,"%18.16e + %18.16ei ",PetscRealPart(*v),PetscImaginaryPart(*v));CHKERRQ(ierr);
|
|
|
710 |
}
|
|
|
711 |
#else
|
|
|
712 |
ierr = PetscViewerASCIIPrintf(viewer,"%18.16e ",*v);CHKERRQ(ierr);
|
|
|
713 |
#endif
|
|
|
714 |
v += ps->ld;
|
|
|
715 |
}
|
|
|
716 |
ierr = PetscViewerASCIIPrintf(viewer,"\n");CHKERRQ(ierr);
|
|
|
717 |
}
|
|
|
718 |
|
|
|
719 |
if (format == PETSC_VIEWER_ASCII_MATLAB) {
|
|
|
720 |
ierr = PetscViewerASCIIPrintf(viewer,"];\n");CHKERRQ(ierr);
|
|
|
721 |
}
|
|
|
722 |
ierr = PetscViewerASCIIUseTabs(viewer,PETSC_TRUE);CHKERRQ(ierr);
|
|
|
723 |
ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
|
| 2777 |
jroman |
724 |
PetscFunctionReturn(0);
|
|
|
725 |
}
|
|
|
726 |
|
|
|
727 |
#undef __FUNCT__
|
| 2780 |
jroman |
728 |
#define __FUNCT__ "PSSortEigenvaluesReal_Private"
|
| 2818 |
jroman |
729 |
PetscErrorCode PSSortEigenvaluesReal_Private(PS ps,PetscInt l,PetscInt n,PetscReal *eig,PetscInt *perm,PetscErrorCode (*comp_func)(PetscScalar,PetscScalar,PetscScalar,PetscScalar,PetscInt*,void*),void *comp_ctx)
|
| 2780 |
jroman |
730 |
{
|
|
|
731 |
PetscErrorCode ierr;
|
|
|
732 |
PetscScalar re;
|
|
|
733 |
PetscInt i,j,result,tmp;
|
|
|
734 |
|
|
|
735 |
PetscFunctionBegin;
|
|
|
736 |
for (i=0;i<n;i++) perm[i] = i;
|
|
|
737 |
/* insertion sort */
|
| 2818 |
jroman |
738 |
for (i=l+1;i<n;i++) {
|
| 2780 |
jroman |
739 |
re = eig[perm[i]];
|
|
|
740 |
j = i-1;
|
|
|
741 |
ierr = (*comp_func)(re,0.0,eig[perm[j]],0.0,&result,comp_ctx);CHKERRQ(ierr);
|
| 2818 |
jroman |
742 |
while (result<=0 && j>=l) {
|
| 2780 |
jroman |
743 |
tmp = perm[j]; perm[j] = perm[j+1]; perm[j+1] = tmp; j--;
|
|
|
744 |
if (j>=0) {
|
|
|
745 |
ierr = (*comp_func)(re,0.0,eig[perm[j]],0.0,&result,comp_ctx);CHKERRQ(ierr);
|
|
|
746 |
}
|
|
|
747 |
}
|
|
|
748 |
}
|
|
|
749 |
PetscFunctionReturn(0);
|
|
|
750 |
}
|
|
|
751 |
|
|
|
752 |
#undef __FUNCT__
|
| 2821 |
jroman |
753 |
#define __FUNCT__ "PSCopyMatrix_Private"
|
|
|
754 |
/*
|
|
|
755 |
PSCopyMatrix_Private - Copies the trailing block of a matrix (from
|
|
|
756 |
rows/columns l to n).
|
|
|
757 |
*/
|
|
|
758 |
PetscErrorCode PSCopyMatrix_Private(PS ps,PSMatType dst,PSMatType src)
|
|
|
759 |
{
|
|
|
760 |
PetscErrorCode ierr;
|
|
|
761 |
PetscInt j,m,off,ld;
|
|
|
762 |
PetscScalar *S,*D;
|
|
|
763 |
|
|
|
764 |
PetscFunctionBegin;
|
|
|
765 |
ld = ps->ld;
|
|
|
766 |
m = ps->n-ps->l;
|
|
|
767 |
off = ps->l+ps->l*ld;
|
|
|
768 |
S = ps->mat[src];
|
|
|
769 |
D = ps->mat[dst];
|
|
|
770 |
for (j=0;j<m;j++) {
|
|
|
771 |
ierr = PetscMemcpy(D+off+j*ld,S+off+j*ld,m*sizeof(PetscScalar));CHKERRQ(ierr);
|
|
|
772 |
}
|
|
|
773 |
PetscFunctionReturn(0);
|
|
|
774 |
}
|
|
|
775 |
|
|
|
776 |
#undef __FUNCT__
|
| 2792 |
jroman |
777 |
#define __FUNCT__ "PSPermuteColumns_Private"
|
| 2818 |
jroman |
778 |
PetscErrorCode PSPermuteColumns_Private(PS ps,PetscInt l,PetscInt n,PSMatType m,PetscInt *perm)
|
| 2791 |
jroman |
779 |
{
|
|
|
780 |
PetscInt i,j,k,p,ld;
|
|
|
781 |
PetscScalar *Q,rtmp;
|
|
|
782 |
|
|
|
783 |
PetscFunctionBegin;
|
|
|
784 |
ld = ps->ld;
|
|
|
785 |
Q = ps->mat[PS_MAT_Q];
|
| 2818 |
jroman |
786 |
for (i=l;i<n;i++) {
|
| 2791 |
jroman |
787 |
p = perm[i];
|
|
|
788 |
if (p != i) {
|
|
|
789 |
j = i + 1;
|
|
|
790 |
while (perm[j] != i) j++;
|
|
|
791 |
perm[j] = p; perm[i] = i;
|
|
|
792 |
/* swap eigenvectors i and j */
|
|
|
793 |
for (k=0;k<n;k++) {
|
|
|
794 |
rtmp = Q[k+p*ld]; Q[k+p*ld] = Q[k+i*ld]; Q[k+i*ld] = rtmp;
|
|
|
795 |
}
|
|
|
796 |
}
|
|
|
797 |
}
|
|
|
798 |
PetscFunctionReturn(0);
|
|
|
799 |
}
|
|
|
800 |
|
|
|
801 |
#undef __FUNCT__
|
| 2757 |
jroman |
802 |
#define __FUNCT__ "PSReset"
|
| 2758 |
jroman |
803 |
/*@
|
| 2757 |
jroman |
804 |
PSReset - Resets the PS context to the initial state.
|
|
|
805 |
|
|
|
806 |
Collective on PS
|
|
|
807 |
|
|
|
808 |
Input Parameter:
|
|
|
809 |
. ps - the projected system context
|
|
|
810 |
|
|
|
811 |
Level: advanced
|
|
|
812 |
|
|
|
813 |
.seealso: PSDestroy()
|
|
|
814 |
@*/
|
|
|
815 |
PetscErrorCode PSReset(PS ps)
|
|
|
816 |
{
|
|
|
817 |
PetscInt i;
|
|
|
818 |
PetscErrorCode ierr;
|
|
|
819 |
|
|
|
820 |
PetscFunctionBegin;
|
|
|
821 |
PetscValidHeaderSpecific(ps,PS_CLASSID,1);
|
| 2794 |
jroman |
822 |
ps->state = PS_STATE_RAW;
|
| 2796 |
jroman |
823 |
ps->method = 0;
|
| 2794 |
jroman |
824 |
ps->compact = PETSC_FALSE;
|
|
|
825 |
ps->ld = 0;
|
|
|
826 |
ps->l = 0;
|
|
|
827 |
ps->n = 0;
|
|
|
828 |
ps->k = 0;
|
| 2757 |
jroman |
829 |
for (i=0;i<PS_NUM_MAT;i++) {
|
|
|
830 |
ierr = PetscFree(ps->mat[i]);CHKERRQ(ierr);
|
|
|
831 |
ierr = PetscFree(ps->rmat[i]);CHKERRQ(ierr);
|
|
|
832 |
}
|
|
|
833 |
ierr = PetscFree(ps->work);CHKERRQ(ierr);
|
|
|
834 |
ierr = PetscFree(ps->rwork);CHKERRQ(ierr);
|
| 2766 |
jroman |
835 |
ierr = PetscFree(ps->iwork);CHKERRQ(ierr);
|
| 2770 |
jroman |
836 |
ps->lwork = 0;
|
|
|
837 |
ps->lrwork = 0;
|
|
|
838 |
ps->liwork = 0;
|
| 2757 |
jroman |
839 |
PetscFunctionReturn(0);
|
|
|
840 |
}
|
|
|
841 |
|
|
|
842 |
#undef __FUNCT__
|
|
|
843 |
#define __FUNCT__ "PSDestroy"
|
|
|
844 |
/*@C
|
|
|
845 |
PSDestroy - Destroys PS context that was created with PSCreate().
|
|
|
846 |
|
|
|
847 |
Collective on PS
|
|
|
848 |
|
|
|
849 |
Input Parameter:
|
|
|
850 |
. ps - the projected system context
|
|
|
851 |
|
|
|
852 |
Level: beginner
|
|
|
853 |
|
|
|
854 |
.seealso: PSCreate()
|
|
|
855 |
@*/
|
|
|
856 |
PetscErrorCode PSDestroy(PS *ps)
|
|
|
857 |
{
|
|
|
858 |
PetscErrorCode ierr;
|
|
|
859 |
|
|
|
860 |
PetscFunctionBegin;
|
|
|
861 |
if (!*ps) PetscFunctionReturn(0);
|
|
|
862 |
PetscValidHeaderSpecific(*ps,PS_CLASSID,1);
|
|
|
863 |
if (--((PetscObject)(*ps))->refct > 0) { *ps = 0; PetscFunctionReturn(0); }
|
|
|
864 |
ierr = PSReset(*ps);CHKERRQ(ierr);
|
|
|
865 |
ierr = PetscHeaderDestroy(ps);CHKERRQ(ierr);
|
|
|
866 |
PetscFunctionReturn(0);
|
|
|
867 |
}
|
|
|
868 |
|
|
|
869 |
#undef __FUNCT__
|
|
|
870 |
#define __FUNCT__ "PSRegister"
|
|
|
871 |
/*@C
|
|
|
872 |
PSRegister - See PSRegisterDynamic()
|
|
|
873 |
|
|
|
874 |
Level: advanced
|
|
|
875 |
@*/
|
|
|
876 |
PetscErrorCode PSRegister(const char *sname,const char *path,const char *name,PetscErrorCode (*function)(PS))
|
|
|
877 |
{
|
|
|
878 |
PetscErrorCode ierr;
|
|
|
879 |
char fullname[PETSC_MAX_PATH_LEN];
|
|
|
880 |
|
|
|
881 |
PetscFunctionBegin;
|
|
|
882 |
ierr = PetscFListConcat(path,name,fullname);CHKERRQ(ierr);
|
|
|
883 |
ierr = PetscFListAdd(&PSList,sname,fullname,(void (*)(void))function);CHKERRQ(ierr);
|
|
|
884 |
PetscFunctionReturn(0);
|
|
|
885 |
}
|
|
|
886 |
|
|
|
887 |
#undef __FUNCT__
|
|
|
888 |
#define __FUNCT__ "PSRegisterDestroy"
|
|
|
889 |
/*@
|
|
|
890 |
PSRegisterDestroy - Frees the list of PS methods that were
|
|
|
891 |
registered by PSRegisterDynamic().
|
|
|
892 |
|
|
|
893 |
Not Collective
|
|
|
894 |
|
|
|
895 |
Level: advanced
|
|
|
896 |
|
|
|
897 |
.seealso: PSRegisterDynamic(), PSRegisterAll()
|
|
|
898 |
@*/
|
|
|
899 |
PetscErrorCode PSRegisterDestroy(void)
|
|
|
900 |
{
|
|
|
901 |
PetscErrorCode ierr;
|
|
|
902 |
|
|
|
903 |
PetscFunctionBegin;
|
|
|
904 |
ierr = PetscFListDestroy(&PSList);CHKERRQ(ierr);
|
|
|
905 |
PSRegisterAllCalled = PETSC_FALSE;
|
|
|
906 |
PetscFunctionReturn(0);
|
|
|
907 |
}
|
|
|
908 |
|
|
|
909 |
EXTERN_C_BEGIN
|
| 2783 |
jroman |
910 |
extern PetscErrorCode PSCreate_HEP(PS);
|
| 2758 |
jroman |
911 |
extern PetscErrorCode PSCreate_NHEP(PS);
|
| 2808 |
carcamgo |
912 |
extern PetscErrorCode PSCreate_GHIEP(PS);
|
| 2757 |
jroman |
913 |
EXTERN_C_END
|
|
|
914 |
|
|
|
915 |
#undef __FUNCT__
|
|
|
916 |
#define __FUNCT__ "PSRegisterAll"
|
|
|
917 |
/*@C
|
|
|
918 |
PSRegisterAll - Registers all of the projected systems in the PS package.
|
|
|
919 |
|
|
|
920 |
Not Collective
|
|
|
921 |
|
|
|
922 |
Input Parameter:
|
|
|
923 |
. path - the library where the routines are to be found (optional)
|
|
|
924 |
|
|
|
925 |
Level: advanced
|
|
|
926 |
@*/
|
|
|
927 |
PetscErrorCode PSRegisterAll(const char *path)
|
|
|
928 |
{
|
|
|
929 |
PetscErrorCode ierr;
|
|
|
930 |
|
|
|
931 |
PetscFunctionBegin;
|
|
|
932 |
PSRegisterAllCalled = PETSC_TRUE;
|
| 2783 |
jroman |
933 |
ierr = PSRegisterDynamic(PSHEP,path,"PSCreate_HEP",PSCreate_HEP);CHKERRQ(ierr);
|
| 2758 |
jroman |
934 |
ierr = PSRegisterDynamic(PSNHEP,path,"PSCreate_NHEP",PSCreate_NHEP);CHKERRQ(ierr);
|
| 2808 |
carcamgo |
935 |
ierr = PSRegisterDynamic(PSGHIEP,path,"PSCreate_GHIEP",PSCreate_GHIEP);CHKERRQ(ierr);
|
| 2757 |
jroman |
936 |
PetscFunctionReturn(0);
|
|
|
937 |
}
|
|
|
938 |
|