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slepc |
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/*
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slepc |
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SLEPc - Scalable Library for Eigenvalue Problem Computations
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eromero |
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Copyright (c) 2002-2011, Universitat Politecnica de Valencia, Spain
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dsic.upv.es!antodo |
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slepc |
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This file is part of SLEPc.
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SLEPc is free software: you can redistribute it and/or modify it under the
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terms of version 3 of the GNU Lesser General Public License as published by
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the Free Software Foundation.
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SLEPc is distributed in the hope that it will be useful, but WITHOUT ANY
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WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
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FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for
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more details.
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You should have received a copy of the GNU Lesser General Public License
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along with SLEPc. If not, see <http://www.gnu.org/licenses/>.
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slepc |
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*/
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dsic.upv.es!antodo |
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static char help[] = "Computes the smallest nonzero eigenvalue of the Laplacian of a graph.\n\n"
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jroman |
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"This example illustrates EPSSetDeflationSpace(). The example graph corresponds to a "
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slepc |
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"2-D regular mesh. The command line options are:\n"
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" -n <n>, where <n> = number of grid subdivisions in x dimension.\n"
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dsic.upv.es!antodo |
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" -m <m>, where <m> = number of grid subdivisions in y dimension.\n\n";
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dsic.upv.es!antodo |
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jroman |
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#include <slepceps.h>
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dsic.upv.es!antodo |
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#undef __FUNCT__
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#define __FUNCT__ "main"
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jroman |
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int main (int argc,char **argv)
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dsic.upv.es!antodo |
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{
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jroman |
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EPS eps; /* eigenproblem solver context */
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Mat A; /* operator matrix */
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Vec x;
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slepc |
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const EPSType type;
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jroman |
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PetscReal tol;
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PetscInt N,n=10,m,i,j,II,Istart,Iend,nev,maxit,its;
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jroman |
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PetscScalar w;
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PetscBool flag;
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jroman |
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PetscErrorCode ierr;
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dsic.upv.es!antodo |
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SlepcInitialize(&argc,&argv,(char*)0,help);
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ierr = PetscOptionsGetInt(PETSC_NULL,"-n",&n,PETSC_NULL);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = PetscOptionsGetInt(PETSC_NULL,"-m",&m,&flag);CHKERRQ(ierr);
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jroman |
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if(!flag) m=n;
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dsic.upv.es!antodo |
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N = n*m;
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jroman |
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ierr = PetscPrintf(PETSC_COMM_WORLD,"\nFiedler vector of a 2-D regular mesh, N=%D (%Dx%D grid)\n\n",N,n,m);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Compute the operator matrix that defines the eigensystem, Ax=kx
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dsic.upv.es!jroman |
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In this example, A = L(G), where L is the Laplacian of graph G, i.e.
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Lii = degree of node i, Lij = -1 if edge (i,j) exists in G
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dsic.upv.es!antodo |
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dsic.upv.es!antodo |
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ierr = MatCreate(PETSC_COMM_WORLD,&A);CHKERRQ(ierr);
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ierr = MatSetSizes(A,PETSC_DECIDE,PETSC_DECIDE,N,N);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = MatSetFromOptions(A);CHKERRQ(ierr);
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ierr = MatGetOwnershipRange(A,&Istart,&Iend);CHKERRQ(ierr);
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jroman |
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for (II=Istart;II<Iend;II++) {
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antodo |
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i = II/n; j = II-i*n;
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dsic.upv.es!antodo |
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w = 0.0;
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antodo |
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if(i>0) { ierr = MatSetValue(A,II,II-n,-1.0,INSERT_VALUES);CHKERRQ(ierr); w=w+1.0; }
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if(i<m-1) { ierr = MatSetValue(A,II,II+n,-1.0,INSERT_VALUES);CHKERRQ(ierr); w=w+1.0; }
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if(j>0) { ierr = MatSetValue(A,II,II-1,-1.0,INSERT_VALUES);CHKERRQ(ierr); w=w+1.0; }
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if(j<n-1) { ierr = MatSetValue(A,II,II+1,-1.0,INSERT_VALUES);CHKERRQ(ierr); w=w+1.0; }
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ierr = MatSetValue(A,II,II,w,INSERT_VALUES);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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}
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ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
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/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Create the eigensolver and set various options
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/*
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Create eigensolver context
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*/
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ierr = EPSCreate(PETSC_COMM_WORLD,&eps);CHKERRQ(ierr);
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/*
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Set operators. In this case, it is a standard eigenvalue problem
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*/
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ierr = EPSSetOperators(eps,A,PETSC_NULL);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = EPSSetProblemType(eps,EPS_HEP);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/*
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dsic.upv.es!jroman |
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Select portion of spectrum
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dsic.upv.es!antodo |
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*/
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dsic.upv.es!jroman |
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ierr = EPSSetWhichEigenpairs(eps,EPS_SMALLEST_REAL);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/*
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Set solver parameters at runtime
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*/
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ierr = EPSSetFromOptions(eps);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/*
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dsic.upv.es!jroman |
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Attach deflation space: in this case, the matrix has a constant
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nullspace, [1 1 ... 1]^T is the eigenvector of the zero eigenvalue
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dsic.upv.es!antodo |
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*/
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ierr = MatGetVecs(A,&x,PETSC_NULL);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = VecSet(x,1.0);CHKERRQ(ierr);
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jroman |
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ierr = EPSSetDeflationSpace(eps,1,&x);CHKERRQ(ierr);
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jroman |
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ierr = VecDestroy(&x);
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dsic.upv.es!antodo |
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dsic.upv.es!antodo |
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/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Solve the eigensystem
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ierr = EPSSolve(eps);CHKERRQ(ierr);
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jroman |
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ierr = EPSGetIterationNumber(eps,&its);CHKERRQ(ierr);
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jroman |
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ierr = PetscPrintf(PETSC_COMM_WORLD," Number of iterations of the method: %D\n",its);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/*
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Optional: Get some information from the solver and display it
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*/
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ierr = EPSGetType(eps,&type);CHKERRQ(ierr);
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ierr = PetscPrintf(PETSC_COMM_WORLD," Solution method: %s\n\n",type);CHKERRQ(ierr);
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slepc |
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ierr = EPSGetDimensions(eps,&nev,PETSC_NULL,PETSC_NULL);CHKERRQ(ierr);
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jroman |
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ierr = PetscPrintf(PETSC_COMM_WORLD," Number of requested eigenvalues: %D\n",nev);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = EPSGetTolerances(eps,&tol,&maxit);CHKERRQ(ierr);
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jroman |
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ierr = PetscPrintf(PETSC_COMM_WORLD," Stopping condition: tol=%.4G, maxit=%D\n",tol,maxit);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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/* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
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Display solution and clean up
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jroman |
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ierr = EPSPrintSolution(eps,PETSC_NULL);CHKERRQ(ierr);
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jroman |
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ierr = EPSDestroy(&eps);CHKERRQ(ierr);
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jroman |
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ierr = MatDestroy(&A);CHKERRQ(ierr);
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dsic.upv.es!antodo |
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ierr = SlepcFinalize();CHKERRQ(ierr);
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return 0;
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}
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